Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRI72_RS09940 Genome accession   NZ_CP023815
Coordinates   1994646..1995314 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain IMT16316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989646..2000314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRI72_RS09915 pyrE 1990171..1990812 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CRI72_RS09920 - 1991110..1992069 (+) 960 WP_022646277.1 reverse transcriptase family protein -
  CRI72_RS09925 slmA 1992115..1992711 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  CRI72_RS09930 dut 1992818..1993276 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CRI72_RS09935 coaBC 1993254..1994474 (-) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CRI72_RS09940 radC 1994646..1995314 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CRI72_RS09945 rpmB 1995531..1995767 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CRI72_RS09950 rpmG 1995788..1995955 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CRI72_RS09955 mutM 1996053..1996862 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CRI72_RS09960 coaD 1996901..1997380 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CRI72_RS09965 waaA 1997388..1998665 (-) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CRI72_RS09970 rfaQ 1999078..2000136 (+) 1059 WP_000360395.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=208733 CRI72_RS09940 WP_001297375.1 1994646..1995314(+) (radC) [Escherichia coli strain IMT16316]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=208733 CRI72_RS09940 WP_001297375.1 1994646..1995314(+) (radC) [Escherichia coli strain IMT16316]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAGTTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTTACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTAATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496