Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRI72_RS05760 Genome accession   NZ_CP023815
Coordinates   1165565..1166041 (-) Length   158 a.a.
NCBI ID   WP_001560293.1    Uniprot ID   -
Organism   Escherichia coli strain IMT16316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1160565..1171041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRI72_RS26885 - 1163345..1163479 (-) 135 Protein_1060 transcriptional regulator -
  CRI72_RS26345 - 1163449..1163592 (-) 144 Protein_1061 hypothetical protein -
  CRI72_RS05735 - 1163677..1163874 (-) 198 WP_001327226.1 DUF957 domain-containing protein -
  CRI72_RS05740 - 1163894..1164382 (-) 489 WP_000777664.1 DUF5983 family protein -
  CRI72_RS05745 - 1164379..1164756 (-) 378 WP_000854919.1 TA system toxin CbtA family protein -
  CRI72_RS05750 cbeA 1164803..1165177 (-) 375 WP_001285608.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CRI72_RS05755 - 1165257..1165478 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  CRI72_RS05760 radC 1165565..1166041 (-) 477 WP_001560293.1 RadC family protein Machinery gene
  CRI72_RS05770 - 1166056..1166535 (-) 480 WP_000706978.1 antirestriction protein -
  CRI72_RS05775 - 1166801..1167619 (-) 819 WP_001175165.1 DUF932 domain-containing protein -
  CRI72_RS05780 - 1167709..1167942 (-) 234 WP_001278293.1 DUF905 family protein -
  CRI72_RS05785 - 1167948..1168625 (-) 678 WP_001097302.1 hypothetical protein -
  CRI72_RS05790 - 1168773..1169453 (-) 681 WP_001282921.1 WYL domain-containing protein -
  CRI72_RS05795 - 1169656..1170540 (-) 885 WP_000010383.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=208712 CRI72_RS05760 WP_001560293.1 1165565..1166041(-) (radC) [Escherichia coli strain IMT16316]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=208712 CRI72_RS05760 WP_001560293.1 1165565..1166041(-) (radC) [Escherichia coli strain IMT16316]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATACTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGTACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment