Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CQR34_RS12640 Genome accession   NZ_CP023814
Coordinates   2122203..2122709 (+) Length   168 a.a.
NCBI ID   WP_002218101.1    Uniprot ID   A1KW60
Organism   Neisseria meningitidis strain M26417     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117203..2127709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQR34_RS12605 (CQR34_12605) - 2117386..2118039 (+) 654 WP_115431160.1 IS1595 family transposase -
  CQR34_RS12610 (CQR34_12610) - 2118252..2119787 (+) 1536 WP_002221654.1 sodium-dependent transporter -
  CQR34_RS12615 (CQR34_12615) - 2119784..2119876 (+) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  CQR34_RS12620 (CQR34_12620) lysA 2119936..2121156 (-) 1221 WP_024464967.1 diaminopimelate decarboxylase -
  CQR34_RS12625 (CQR34_12625) lptM 2121167..2121337 (-) 171 WP_002218098.1 LPS translocon maturation chaperone LptM -
  CQR34_RS12630 (CQR34_12630) cyaY 2121408..2121731 (+) 324 WP_002218099.1 iron donor protein CyaY -
  CQR34_RS12635 (CQR34_12635) - 2121762..2122181 (+) 420 WP_002218100.1 DUF2251 domain-containing protein -
  CQR34_RS12640 (CQR34_12640) luxS 2122203..2122709 (+) 507 WP_002218101.1 S-ribosylhomocysteine lyase Regulator
  CQR34_RS12645 (CQR34_12645) polA 2122855..2125647 (+) 2793 WP_002224673.1 DNA polymerase I -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18683.41 Da        Isoelectric Point: 5.5451

>NTDB_id=208690 CQR34_RS12640 WP_002218101.1 2122203..2122709(+) (luxS) [Neisseria meningitidis strain M26417]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=208690 CQR34_RS12640 WP_002218101.1 2122203..2122709(+) (luxS) [Neisseria meningitidis strain M26417]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCATTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCATGGCTCGCCTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KW60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762

Multiple sequence alignment