Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   b2644 Genome accession   NC_000913
Coordinates   2776386..2776868 (+) Length   160 a.a.
NCBI ID   NP_417131.1    Uniprot ID   P52140
Organism   Escherichia coli str. K-12 substr. MG1655     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2771386..2781868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  b2638 yfjU 2771840..2772154 (-) 315 YP_009518807.1 putative arsenate reductase-like protein YfjU -
  b2642 yfjW 2773318..2775021 (+) 1704 NP_417129.1 uncharacterized protein YfjW -
  b2643 yfjX 2775919..2776377 (+) 459 NP_417130.1 putative antirestriction protein YfjX -
  b2644 radC 2776386..2776868 (+) 483 NP_417131.1 RadC-like JAB domain-containing protein YfjY Machinery gene
  b4548 ypjJ 2776877..2777077 (+) 201 YP_588466.1 DUF987 domain-containing protein YpjJ -
  b2645 yfjZ 2777115..2777432 (+) 318 NP_417132.1 putative antitoxin of the YpjF-YfjZ toxin-antitoxin system -
  b2646 ypjF 2777453..2777782 (+) 330 NP_417133.1 toxin of the YpjF-YfjZ toxin-antitoxin system -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=20865 b2644 NP_417131.1 2776386..2776868(+) (radC) [Escherichia coli str. K-12 substr. MG1655]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=20865 b2644 NP_417131.1 2776386..2776868(+) (radC) [Escherichia coli str. K-12 substr. MG1655]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375

Multiple sequence alignment