Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   b2002 Genome accession   NC_000913
Coordinates   2076308..2076754 (+) Length   148 a.a.
NCBI ID   NP_416506.1    Uniprot ID   P76362
Organism   Escherichia coli str. K-12 substr. MG1655     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2071308..2081754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  b2000 flu 2071539..2074658 (+) 3120 YP_026164.1 self recognizing antigen 43 (Ag43) autotransporter -
  b2001 yeeR 2074779..2076311 (+) 1533 NP_416505.2 inner membrane protein YeeR -
  b2002 radC 2076308..2076754 (+) 447 NP_416506.1 RadC-like JAB domain-containing protein YeeS Machinery gene
  b2003 yeeT 2076817..2077038 (+) 222 NP_416507.1 DUF987 domain-containing protein YeeT -
  b2004 cbeA 2077112..2077480 (+) 369 NP_416508.1 cytoskeleton bundling-enhancing antitoxin CbeA -
  b2005 cbtA 2077569..2077943 (+) 375 NP_416509.1 cytoskeleton-binding toxin CbtA -
  b2006 yeeW 2077940..2078134 (+) 195 YP_009518797.1 putative uncharacterized protein YeeW -
  b4538 yoeF 2078575..2078931 (+) 357 YP_009518798.1 putative uncharacterized protein YoeF -
  b2007 tmaR 2079032..2079361 (-) 330 NP_416511.4 PTS system regulator TmaR -
  b4818 yoeJ 2079427..2079477 (-) 51 YP_010283912.1 protein YoeJ -
  b2008 yeeA 2079533..2080591 (-) 1059 NP_416512.1 putative transporter YeeA -
  b2009 sbmC 2080789..2081262 (-) 474 NP_416513.1 DNA gyrase inhibitor -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16556.98 Da        Isoelectric Point: 7.6151

>NTDB_id=20854 b2002 NP_416506.1 2076308..2076754(+) (radC) [Escherichia coli str. K-12 substr. MG1655]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=20854 b2002 NP_416506.1 2076308..2076754(+) (radC) [Escherichia coli str. K-12 substr. MG1655]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P76362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

76.351

0.419

Multiple sequence alignment