Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   CPQ91_RS05885 Genome accession   NZ_CP023729
Coordinates   1168484..1171876 (+) Length   1130 a.a.
NCBI ID   WP_003180433.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 9789     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1163484..1176876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPQ91_RS05875 (CPQ91_05875) addA 1163548..1167240 (+) 3693 WP_003180429.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  CPQ91_RS05880 (CPQ91_05880) sbcD 1167306..1168487 (+) 1182 WP_003180431.1 exonuclease subunit SbcD -
  CPQ91_RS05885 (CPQ91_05885) sbcC 1168484..1171876 (+) 3393 WP_003180433.1 exonuclease subunit SbcC Machinery gene
  CPQ91_RS05890 (CPQ91_05890) - 1171921..1172139 (-) 219 WP_016885923.1 spore germination protein -
  CPQ91_RS05895 (CPQ91_05895) - 1172195..1172578 (-) 384 WP_003180437.1 spore germination protein GerPE -
  CPQ91_RS05900 (CPQ91_05900) - 1172575..1172757 (-) 183 WP_003180439.1 hypothetical protein -
  CPQ91_RS05905 (CPQ91_05905) - 1172754..1173359 (-) 606 WP_003180441.1 spore germination protein GerPC -
  CPQ91_RS05910 (CPQ91_05910) - 1173380..1173622 (-) 243 WP_003180443.1 spore germination protein GerPB -
  CPQ91_RS05915 (CPQ91_05915) - 1173634..1173855 (-) 222 WP_003180445.1 spore germination protein -
  CPQ91_RS05920 (CPQ91_05920) - 1174037..1174330 (+) 294 WP_009328891.1 DUF3784 domain-containing protein -
  CPQ91_RS05925 (CPQ91_05925) - 1174412..1174591 (-) 180 WP_011197747.1 aspartyl-phosphate phosphatase Spo0E family protein -
  CPQ91_RS05930 (CPQ91_05930) - 1174758..1175831 (-) 1074 WP_016886397.1 CotH kinase family protein -
  CPQ91_RS05935 (CPQ91_05935) cotG 1175997..1176503 (+) 507 WP_009328889.1 spore coat protein CotG -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128977.64 Da        Isoelectric Point: 5.4261

>NTDB_id=208426 CPQ91_RS05885 WP_003180433.1 1168484..1171876(+) (sbcC) [Bacillus licheniformis strain ATCC 9789]
MKPISLSIKGLHSFRQEQVIDFERLCDAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDELAVSFTF
KLQTGHETAYKVERVFKRTDAVKVKTSICRFIEMKEEQIVLADKANEVNRKIEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRQMLQRLFNLEQYGDRLVKKLKKQAQTAQARKNEMLAEQAGLGDAGEEALKQAEQHLEEAESLLQSKKRERDAEA
QRFAEYQEIWNLQQEKESYLKKEAELLKKQEQIREKESRLHLAETANTLKPYADALLAAREDAERAHREEKQAREQLEQY
EELHKKTEREYEDFRRLKNEKEPELLKQEEQLTALKEIENKRLAAQAEAEKKQREQRLKEEEIKHAADELAKVKSLLERG
TAKQNQLKAELKSVQVSSEERKNCRNANQLAFHIQQLNNDAALEKERLGQQETLIKELQQEQQAVDQKVKAETERIEALF
AAVERAYALVCETDRSLSETIRVASQKKEEIAAKREQANRDQLAIELAKQLKDGEPCPVCGSVHHEMPARVGIESLSFKE
ADSELEKTEAIIAEAGALAQEFLSAKVALEQQSDHLVSECPFLVKSKHELPETAASIEEGTIPERYNRISFEWKGIRQDL
AETKSRMSKLLHTYKELCKKRDQISERLSHEEKERNRLQNRVGELNDQLNERRKSFGEQFDGLSYEQAEKWQKTIEEKDL
AAEEFEKRIETSVGFLTKHEQQKEKLTERLFALDKEKLDLRYAVESLNKEINDYQKELMGYPDTAAIDKKLQDVKTQLAK
LHEQEQTLYGRLKETESEVSRLRGQTKGCELALREAEARLAKAADIWQEKSGGTPFEKASEVKASILDRDDLARLKEDIQ
MHWDQTKQCESNIKRITEKLDGRSVSEESWEKAAVTKDKAEEAFSKALEERGAAGKALAVIRENHKRFKELEASLAEWQT
YIDRLDKLQAVFKGNSFVEYLAEEQLESVTRDASARLGELTRQRYAIEVDSEGGFVMRDDANGGVKRPVTSLSGGETFLT
SLALALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPAEPSG
KGTAVSLEMI

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=208426 CPQ91_RS05885 WP_003180433.1 1168484..1171876(+) (sbcC) [Bacillus licheniformis strain ATCC 9789]
ATGAAGCCGATTTCTCTGTCTATTAAGGGGCTGCACAGTTTCAGGCAGGAGCAGGTGATCGATTTTGAGCGCCTGTGCGA
TGCCGGTGTATTCGGTATCTTCGGGCCGACCGGAAGCGGCAAGTCGTCGATTCTTGACGCGATGACTCTCGCTTTGTACG
GGAAGGTGGAGCGGGCCGCCAATAATACGCACGGTATTTTGAATCATGCCGAAGATGAGCTTGCCGTATCGTTTACGTTT
AAGCTGCAGACAGGCCATGAGACGGCTTATAAAGTGGAACGGGTCTTTAAGCGGACAGATGCCGTCAAGGTCAAAACATC
GATCTGCCGCTTCATTGAAATGAAAGAGGAACAAATCGTTCTGGCCGATAAAGCGAATGAAGTAAACCGGAAAATCGAAG
AGCTGCTGGGCTTGACGATCGACGATTTTACAAGGGCAGTCGTCCTGCCGCAAGGTAAATTCGCCGAATTTCTTTCCTTA
AAAGGAGCGGAGCGGCGGCAGATGCTTCAGCGCCTGTTCAACCTCGAACAATACGGGGACAGGCTCGTCAAAAAACTGAA
GAAACAGGCGCAAACAGCGCAGGCCAGAAAAAATGAGATGCTTGCCGAGCAGGCTGGATTGGGCGATGCGGGGGAAGAGG
CGCTGAAACAGGCGGAACAGCATCTCGAAGAAGCTGAAAGCCTTTTGCAAAGCAAGAAGCGCGAACGAGACGCAGAAGCG
CAGCGCTTTGCGGAGTATCAGGAGATTTGGAACCTGCAGCAGGAAAAAGAAAGCTATCTGAAAAAAGAGGCGGAGCTTTT
AAAGAAACAGGAACAGATTCGGGAAAAAGAAAGCCGCCTGCACCTCGCCGAAACGGCAAATACGCTCAAGCCTTATGCAG
ACGCCTTGCTGGCAGCGCGGGAAGATGCCGAACGCGCACACCGGGAAGAAAAACAAGCGCGGGAACAATTAGAACAATAT
GAAGAGCTTCATAAAAAAACAGAACGCGAGTACGAGGATTTCAGGCGTCTTAAAAATGAAAAGGAACCGGAGCTTCTCAA
GCAAGAAGAACAGCTCACCGCTTTGAAGGAAATTGAAAACAAGCGGCTAGCCGCACAGGCCGAGGCCGAGAAGAAGCAGC
GCGAACAGCGTTTGAAAGAAGAGGAAATCAAGCATGCGGCAGACGAGCTGGCCAAGGTGAAAAGTCTGCTTGAACGCGGG
ACAGCCAAGCAGAATCAGCTGAAAGCGGAGCTGAAATCTGTCCAGGTATCTAGCGAAGAGCGTAAAAACTGCCGAAATGC
CAATCAGCTTGCTTTTCACATTCAACAGCTTAACAACGATGCCGCTTTAGAAAAGGAACGGCTTGGTCAGCAGGAGACGC
TGATTAAAGAGCTCCAGCAAGAACAGCAAGCGGTGGATCAAAAGGTAAAAGCTGAAACCGAACGCATCGAGGCATTGTTT
GCCGCTGTCGAACGAGCGTACGCGCTCGTTTGCGAAACAGACAGATCGCTCTCTGAGACCATCCGTGTGGCATCTCAAAA
AAAAGAAGAGATTGCGGCAAAACGGGAACAGGCAAACCGTGATCAGCTGGCAATCGAACTGGCAAAGCAGCTCAAAGACG
GAGAGCCTTGTCCGGTCTGCGGATCTGTACATCATGAAATGCCCGCCCGCGTCGGCATAGAAAGCCTGTCCTTTAAAGAG
GCGGATTCCGAACTGGAGAAAACGGAAGCCATCATCGCTGAAGCCGGTGCGCTGGCTCAGGAGTTTCTCTCGGCCAAAGT
GGCACTCGAACAGCAATCCGACCACCTGGTGAGCGAATGCCCGTTTTTAGTCAAGAGCAAACATGAACTGCCTGAAACCG
CTGCATCGATAGAAGAAGGCACCATTCCCGAACGGTACAACCGCATCAGCTTTGAATGGAAAGGAATCAGACAGGATCTC
GCAGAGACAAAAAGCAGGATGTCCAAGCTCCTTCACACATATAAAGAGCTCTGCAAAAAACGCGACCAAATCAGCGAGCG
ACTCAGCCATGAAGAAAAGGAGCGTAACAGGCTTCAAAACCGCGTCGGCGAATTAAATGACCAGTTAAATGAACGCCGAA
AAAGCTTCGGCGAACAATTCGACGGCCTCTCTTATGAACAGGCTGAAAAATGGCAAAAAACGATTGAAGAAAAAGATCTG
GCCGCAGAGGAATTCGAAAAGCGTATCGAAACGAGCGTCGGCTTTCTCACAAAACATGAACAGCAAAAAGAGAAGCTCAC
CGAGCGCTTGTTTGCGCTTGATAAAGAAAAGCTCGACCTCCGCTATGCTGTCGAAAGCCTTAATAAAGAAATAAACGATT
ATCAAAAAGAGCTGATGGGCTATCCCGATACAGCTGCAATCGACAAAAAGCTTCAAGACGTGAAAACGCAATTGGCCAAG
CTGCATGAGCAGGAACAGACGCTTTACGGACGGCTCAAAGAGACCGAATCCGAAGTCAGCCGTTTAAGAGGACAGACAAA
AGGGTGTGAGCTCGCTTTGCGTGAAGCGGAAGCAAGGCTTGCGAAAGCGGCGGACATCTGGCAGGAAAAATCCGGAGGTA
CACCGTTTGAAAAGGCCTCTGAAGTGAAAGCGAGCATTTTAGACCGCGATGATCTTGCCCGGCTGAAAGAAGACATTCAA
ATGCATTGGGATCAGACAAAACAGTGCGAGTCCAATATCAAGCGGATTACGGAAAAGCTTGATGGGAGATCGGTTTCTGA
GGAGAGTTGGGAAAAAGCCGCCGTCACGAAGGACAAAGCTGAGGAGGCATTCAGCAAAGCCTTGGAAGAAAGGGGCGCGG
CCGGCAAAGCTCTCGCCGTCATCCGCGAGAACCATAAAAGGTTTAAGGAACTTGAAGCATCATTGGCTGAATGGCAGACA
TACATCGACCGTCTTGATAAACTCCAAGCCGTCTTTAAAGGAAACAGCTTTGTTGAATACTTGGCAGAAGAGCAGCTTGA
AAGCGTCACAAGAGACGCATCTGCAAGACTCGGCGAACTGACAAGACAGAGGTATGCGATTGAAGTCGACTCAGAAGGCG
GTTTTGTGATGAGGGACGATGCCAACGGCGGAGTCAAGCGCCCTGTTACGAGTCTGTCAGGTGGGGAGACGTTTCTGACT
TCACTGGCGCTGGCGCTTGCACTTTCGGCACAGATCCAGCTTCGCGGAGAGTATCCGCTCCAATTCTTCTTTTTGGACGA
AGGGTTTGGCACGCTTGATCAGGATTTGCTGGATACGGTCGTGACCGCATTGGAGAAGCTTCAGTCTGACAATCTGTCGG
TCGGTGTGATCAGCCACGTTCAGGAACTTCGGGCCAGGCTGCCGAAGAAGCTGATTGTCCATCCGGCTGAACCGAGCGGC
AAAGGCACAGCTGTATCGCTTGAAATGATTTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(5-276)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

56.614

100

0.568

Multiple sequence alignment