Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CP957_RS17780 Genome accession   NZ_CP023673
Coordinates   3229569..3230045 (-) Length   158 a.a.
NCBI ID   WP_062882313.1    Uniprot ID   -
Organism   Escherichia coli strain SMN013SH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3224569..3235045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP957_RS17735 (CP957_17600) aat 3225005..3225709 (+) 705 WP_062882312.1 leucyl/phenylalanyl-tRNA--protein transferase -
  CP957_RS17740 (CP957_17610) infA 3225994..3226212 (+) 219 WP_001040187.1 translation initiation factor IF-1 -
  CP957_RS17750 (CP957_17620) - 3226703..3227545 (-) 843 WP_001280481.1 DUF4942 domain-containing protein -
  CP957_RS17755 (CP957_17625) - 3227630..3227827 (-) 198 WP_000839282.1 DUF957 domain-containing protein -
  CP957_RS17760 (CP957_17630) - 3227839..3228330 (-) 492 WP_000976857.1 DUF5983 family protein -
  CP957_RS17765 (CP957_17635) - 3228327..3228701 (-) 375 WP_000854914.1 TA system toxin CbtA family protein -
  CP957_RS17770 (CP957_17640) - 3228748..3229122 (-) 375 WP_001280954.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CP957_RS17775 (CP957_17645) yeeT 3229285..3229506 (-) 222 WP_001220314.1 DUF987 domain-containing protein -
  CP957_RS17780 (CP957_17650) radC 3229569..3230045 (-) 477 WP_062882313.1 RadC family protein Machinery gene
  CP957_RS17785 (CP957_17655) - 3230061..3230546 (-) 486 WP_000214398.1 antirestriction protein -
  CP957_RS17790 (CP957_17660) - 3230637..3231455 (-) 819 WP_001234682.1 DUF932 domain-containing protein -
  CP957_RS17805 (CP957_17675) - 3231795..3232864 (-) 1070 Protein_3295 patatin-like phospholipase family protein -
  CP957_RS17810 (CP957_17680) - 3232861..3233766 (-) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17654.23 Da        Isoelectric Point: 6.7739

>NTDB_id=208358 CP957_RS17780 WP_062882313.1 3229569..3230045(-) (radC) [Escherichia coli strain SMN013SH2]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=208358 CP957_RS17780 WP_062882313.1 3229569..3230045(-) (radC) [Escherichia coli strain SMN013SH2]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment