Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CP957_RS17340 Genome accession   NZ_CP023673
Coordinates   3130420..3131049 (-) Length   209 a.a.
NCBI ID   WP_032186268.1    Uniprot ID   -
Organism   Escherichia coli strain SMN013SH2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125420..3136049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP957_RS17325 (CP957_17185) helD 3125662..3127716 (-) 2055 WP_000420537.1 DNA helicase IV -
  CP957_RS17330 (CP957_17190) yccF 3127839..3128285 (+) 447 WP_062882281.1 YccF domain-containing protein -
  CP957_RS17335 (CP957_17195) yccS 3128295..3130457 (+) 2163 WP_074434046.1 YccS family putative transporter -
  CP957_RS17340 (CP957_17200) sxy/tfoX 3130420..3131049 (-) 630 WP_032186268.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CP957_RS17345 (CP957_17205) sulA 3131268..3131777 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CP957_RS17355 (CP957_17215) ompA 3132134..3133174 (+) 1041 WP_062882317.1 porin OmpA -
  CP957_RS17360 (CP957_17220) matP 3133250..3133702 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CP957_RS17365 (CP957_17225) ycbZ 3133888..3135648 (+) 1761 WP_062882282.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.04 Da        Isoelectric Point: 8.9883

>NTDB_id=208356 CP957_RS17340 WP_032186268.1 3130420..3131049(-) (sxy/tfoX) [Escherichia coli strain SMN013SH2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLWQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=208356 CP957_RS17340 WP_032186268.1 3130420..3131049(-) (sxy/tfoX) [Escherichia coli strain SMN013SH2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGTGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment