Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   b0472 Genome accession   NC_000913
Coordinates   494405..495010 (+) Length   201 a.a.
NCBI ID   NP_415005.1    Uniprot ID   P0A7H6
Organism   Escherichia coli str. K-12 substr. MG1655     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 489405..500010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  b0466 ybaM 490110..490271 (-) 162 NP_414999.1 DUF2496 domain-containing protein YbaM -
  b0467 priC 490285..490812 (-) 528 NP_415000.1 primosomal replication protein N'' -
  b0468 ybaN 490882..491259 (+) 378 NP_415001.1 DUF454 domain-containing inner membrane protein YbaN -
  b0469 apt 491412..491963 (+) 552 NP_415002.1 adenine phosphoribosyltransferase -
  b0470 dnaX 492092..493386 (+) 1295 YP_009518751.1 DNA polymerase III subunit gamma -
  b0471 ybaB 494076..494405 (+) 330 NP_415004.1 putative nucleoid-associated protein YbaB -
  b0472 recR 494405..495010 (+) 606 NP_415005.1 recombination mediator protein RecR Machinery gene
  b0473 htpG 495120..496994 (+) 1875 NP_415006.1 chaperone protein HtpG -
  b0474 adk 497175..497819 (+) 645 NP_415007.1 adenylate kinase -
  b0475 hemH 498055..499017 (+) 963 NP_415008.1 ferrochelatase -
  b0476 aes 499014..499973 (-) 960 NP_415009.1 acetylesterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=20835 b0472 NP_415005.1 494405..495010(+) (recR) [Escherichia coli str. K-12 substr. MG1655]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=20835 b0472 NP_415005.1 494405..495010(+) (recR) [Escherichia coli str. K-12 substr. MG1655]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443