Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CP957_RS05730 Genome accession   NZ_CP023673
Coordinates   1079315..1079830 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SMN013SH2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074315..1084830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP957_RS05685 (CP957_05635) csrA 1074902..1075087 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CP957_RS05715 (CP957_05665) yqaB 1076545..1077111 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CP957_RS05720 (CP957_05670) yqaA 1077108..1077536 (+) 429 WP_001287457.1 YqaA family protein -
  CP957_RS05725 (CP957_05675) gshA 1077609..1079165 (+) 1557 WP_062881990.1 glutamate--cysteine ligase -
  CP957_RS05730 (CP957_05680) luxS 1079315..1079830 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CP957_RS05735 (CP957_05685) emrB 1079894..1081432 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CP957_RS05740 (CP957_05690) emrA 1081449..1082621 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CP957_RS05745 (CP957_05695) emrR 1082748..1083278 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CP957_RS05750 (CP957_05700) ygaH 1083369..1083704 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CP957_RS05755 (CP957_05705) ygaZ 1083694..1084431 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=208336 CP957_RS05730 WP_001130211.1 1079315..1079830(+) (luxS) [Escherichia coli strain SMN013SH2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=208336 CP957_RS05730 WP_001130211.1 1079315..1079830(+) (luxS) [Escherichia coli strain SMN013SH2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment