Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CP957_RS00545 Genome accession   NZ_CP023673
Coordinates   102183..102851 (+) Length   222 a.a.
NCBI ID   WP_096851616.1    Uniprot ID   -
Organism   Escherichia coli strain SMN013SH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97183..107851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP957_RS00510 (CP957_00510) yicC 97202..98065 (-) 864 WP_096851617.1 YicC/YloC family endoribonuclease -
  CP957_RS00520 (CP957_00520) rph 98192..98908 (+) 717 WP_001247089.1 ribonuclease PH -
  CP957_RS00525 (CP957_00525) pyrE 98974..99615 (+) 642 WP_000806182.1 orotate phosphoribosyltransferase -
  CP957_RS00530 (CP957_00530) slmA 99652..100248 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CP957_RS00535 (CP957_00535) dut 100355..100813 (-) 459 WP_062882545.1 dUTP diphosphatase -
  CP957_RS00540 (CP957_00540) coaBC 100791..102011 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CP957_RS00545 (CP957_00545) radC 102183..102851 (+) 669 WP_096851616.1 DNA repair protein RadC Machinery gene
  CP957_RS00550 (CP957_00550) rpmB 103068..103304 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CP957_RS00555 (CP957_00555) rpmG 103325..103492 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CP957_RS00560 (CP957_00560) mutM 103590..104399 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CP957_RS00565 (CP957_00565) coaD 104438..104917 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CP957_RS00570 (CP957_00570) waaA 104925..106202 (-) 1278 WP_062882544.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CP957_RS00575 (CP957_00575) rfaQ 106615..107673 (+) 1059 WP_096851615.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25273.32 Da        Isoelectric Point: 7.9748

>NTDB_id=208317 CP957_RS00545 WP_096851616.1 102183..102851(+) (radC) [Escherichia coli strain SMN013SH2]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTQAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=208317 CP957_RS00545 WP_096851616.1 102183..102851(+) (radC) [Escherichia coli strain SMN013SH2]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCAGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGGGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491