Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BB790_RS17865 Genome accession   NZ_CP018364
Coordinates   3377195..3377791 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain Kp_Goe_62629     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3372195..3382791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB790_RS17850 (BB790_17700) helD 3372403..3374457 (-) 2055 WP_002898429.1 DNA helicase IV -
  BB790_RS17855 (BB790_17705) - 3374582..3375028 (+) 447 WP_002898425.1 YccF domain-containing protein -
  BB790_RS17860 (BB790_17710) yccS 3375046..3377181 (+) 2136 WP_002898422.1 YccS family putative transporter -
  BB790_RS17865 (BB790_17715) sxy/tfoX 3377195..3377791 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  BB790_RS17875 (BB790_17725) sulA 3378140..3378649 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  BB790_RS17880 (BB790_17730) ompA 3379002..3380072 (+) 1071 WP_002898408.1 porin OmpA -
  BB790_RS17885 (BB790_17735) matP 3380204..3380656 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  BB790_RS17890 (BB790_17740) - 3380842..3382599 (+) 1758 WP_002898401.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=208299 BB790_RS17865 WP_004150836.1 3377195..3377791(-) (sxy/tfoX) [Klebsiella pneumoniae strain Kp_Goe_62629]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=208299 BB790_RS17865 WP_004150836.1 3377195..3377791(-) (sxy/tfoX) [Klebsiella pneumoniae strain Kp_Goe_62629]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment