Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SGL_RS16495 Genome accession   NC_000911
Coordinates   3152955..3153314 (-) Length   119 a.a.
NCBI ID   WP_010874013.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3147955..3158314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGL_RS16480 (sll0042) - 3148438..3148929 (-) 492 WP_010874010.1 methyl-accepting chemotaxis protein -
  SGL_RS16485 (sll0041) - 3148975..3151977 (-) 3003 WP_010874011.1 methyl-accepting chemotaxis protein -
  SGL_RS16490 (sll0040) - 3152239..3152817 (-) 579 WP_020861981.1 chemotaxis protein CheW -
  SGL_RS16495 (sll0039) pilH 3152955..3153314 (-) 360 WP_010874013.1 response regulator Machinery gene
  SGL_RS16500 (sll0038) - 3153452..3154660 (-) 1209 WP_010874014.1 response regulator -
  SGL_RS16505 (slr0031) - 3154910..3156664 (+) 1755 WP_010874015.1 M61 family metallopeptidase -
  SGL_RS16510 (slr0032) - 3156760..3157677 (+) 918 WP_010874016.1 branched-chain amino acid transaminase -
  SGL_RS16515 (slr0033) gatC 3157734..3158048 (+) 315 WP_010874017.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13181.15 Da        Isoelectric Point: 4.5778

>NTDB_id=20822 SGL_RS16495 WP_010874013.1 3152955..3153314(-) (pilH) [Synechocystis sp. PCC 6803]
MGSALVIDDSSTERSIISDFCQKLGINVTTAISGEEALEKLSQAVPDVIILDIVLPGRSGFEICRELKDKDRTKSIPIIL
CSTKATDMDKFWGKRQGADAYITKPIDQEEFNTVIKQFI

Nucleotide


Download         Length: 360 bp        

>NTDB_id=20822 SGL_RS16495 WP_010874013.1 3152955..3153314(-) (pilH) [Synechocystis sp. PCC 6803]
ATGGGCAGCGCACTTGTTATTGACGATTCCTCTACAGAACGTTCAATTATCAGTGATTTTTGTCAGAAACTAGGCATTAA
CGTCACCACCGCCATCAGTGGAGAAGAAGCCCTGGAAAAACTTTCCCAGGCAGTGCCGGACGTAATTATCTTAGATATTG
TGCTGCCGGGGCGCAGTGGTTTTGAAATTTGTCGAGAATTGAAAGACAAAGACCGGACTAAAAGTATTCCAATAATCCTC
TGTTCCACTAAGGCCACGGATATGGATAAATTTTGGGGCAAACGCCAAGGGGCGGACGCCTATATTACTAAACCCATTGA
CCAAGAGGAGTTCAACACGGTAATCAAGCAATTTATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

47.059

100

0.471
  micA Streptococcus pneumoniae Cp1015

36.975

100

0.37
  vicR Streptococcus mutans UA159

36.134

100

0.361

Multiple sequence alignment