Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECs_1043 Genome accession   NC_002695
Coordinates   1150610..1151239 (+) Length   209 a.a.
NCBI ID   NP_309070.1    Uniprot ID   Q8XD96
Organism   Escherichia coli O157:H7 str. Sakai     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1145610..1156239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECs_1039 ycbZ 1146011..1147771 (-) 1761 NP_309066.1 peptidase -
  ECs_1040 matP 1147957..1148409 (+) 453 NP_309067.1 Ter macrodomain organizer matS-binding protein -
  ECs_1041 ompA 1148485..1149525 (-) 1041 NP_309068.1 outer membrane protein OmpA -
  ECs_1042 sulA 1149882..1150391 (-) 510 NP_309069.1 SOS cell division inhibitor -
  ECs_1043 sxy/tfoX 1150610..1151239 (+) 630 NP_309070.1 CRP-S-dependent promoter expression factor Regulator
  ECs_1044 yccS 1151202..1153364 (-) 2163 NP_309071.3 transporter -
  ECs_1045 yccF 1153374..1153820 (-) 447 NP_309072.1 inner membrane protein -
  ECs_1046 helD 1153943..1155997 (+) 2055 NP_309073.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=20822 ECs_1043 NP_309070.1 1150610..1151239(+) (sxy/tfoX) [Escherichia coli O157:H7 str. Sakai]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=20822 ECs_1043 NP_309070.1 1150610..1151239(+) (sxy/tfoX) [Escherichia coli O157:H7 str. Sakai]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment