Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BSL41_RS02530 Genome accession   NZ_CP018347
Coordinates   438468..439829 (+) Length   453 a.a.
NCBI ID   WP_073076903.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SWU02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 433468..444829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL41_RS02490 - 433579..433788 (+) 210 Protein_412 transposase -
  BSL41_RS02495 - 433823..434620 (-) 798 Protein_413 transposase -
  BSL41_RS02500 comW 434886..435122 (+) 237 WP_000939544.1 sigma(X)-activator ComW Regulator
  BSL41_RS02505 - 435353..436639 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  BSL41_RS02510 tadA 436840..437307 (+) 468 WP_000291879.1 tRNA adenosine(34) deaminase TadA -
  BSL41_RS02520 - 437494..437937 (+) 444 WP_000701992.1 dUTP diphosphatase -
  BSL41_RS02525 - 437939..438454 (+) 516 WP_000691236.1 histidine phosphatase family protein -
  BSL41_RS02530 radA 438468..439829 (+) 1362 WP_073076903.1 DNA repair protein RadA Machinery gene
  BSL41_RS02535 - 439902..440399 (+) 498 WP_001809263.1 carbonic anhydrase -
  BSL41_RS02540 - 440424..441239 (+) 816 WP_000749768.1 PrsW family intramembrane metalloprotease -
  BSL41_RS02545 - 441384..442352 (+) 969 WP_000010163.1 ribose-phosphate diphosphokinase -
  BSL41_RS11555 - 442486..442767 (-) 282 Protein_423 ISL3 family transposase -
  BSL41_RS12255 - 442895..443802 (-) 908 Protein_424 Rpn family recombination-promoting nuclease/putative transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49462.93 Da        Isoelectric Point: 6.1868

>NTDB_id=208219 BSL41_RS02530 WP_073076903.1 438468..439829(+) (radA) [Streptococcus pneumoniae strain SWU02]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINETAKLGFTKIYVPQNSLTGITLPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=208219 BSL41_RS02530 WP_073076903.1 438468..439829(+) (radA) [Streptococcus pneumoniae strain SWU02]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTAGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCTACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAG
CGTATCCAGCCAGACTTTCTCATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTACGTGAAGTGACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATG
TGACCAAAGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCACACCTTTCGTATTTTGAGAGCGGTCAAAAATCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCG
TTGTAACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCCATTGACTTGGCTGTTGCAGTTGCTA
TTGCTTCGAGCTACAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAACGCATCAACGAAACTGCTAAACTGGGCTTTACTAAGATTTATGTACCTCAGAATTCCTT
GACAGGAATCACTCTGCCTAAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

99.558

100

0.996
  radA Streptococcus pneumoniae D39

99.558

100

0.996
  radA Streptococcus pneumoniae R6

99.558

100

0.996
  radA Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radA Streptococcus mitis SK321

99.117

100

0.991
  radA Streptococcus mitis NCTC 12261

99.117

100

0.991
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629

Multiple sequence alignment