Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BSL41_RS02390 Genome accession   NZ_CP018347
Coordinates   412327..413085 (+) Length   252 a.a.
NCBI ID   WP_000410376.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SWU02     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 407327..418085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL41_RS02360 comE 407924..408676 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  BSL41_RS02365 comD/comD1 408673..409998 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  BSL41_RS02370 comC/comC1 410019..410144 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  BSL41_RS02380 rlmH 410426..410905 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  BSL41_RS02385 htrA 411088..412269 (+) 1182 WP_000681597.1 S1C family serine protease Regulator
  BSL41_RS02390 spo0J 412327..413085 (+) 759 WP_000410376.1 ParB/RepB/Spo0J family partition protein Regulator
  BSL41_RS02395 dnaA 413298..414659 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  BSL41_RS02400 dnaN 414818..415954 (+) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  BSL41_RS02405 - 416019..416213 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  BSL41_RS02410 ychF 416297..417412 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  BSL41_RS02415 pth 417483..418052 (+) 570 WP_000163933.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29130.48 Da        Isoelectric Point: 8.0022

>NTDB_id=208216 BSL41_RS02390 WP_000410376.1 412327..413085(+) (spo0J) [Streptococcus pneumoniae strain SWU02]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEACAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=208216 BSL41_RS02390 WP_000410376.1 412327..413085(+) (spo0J) [Streptococcus pneumoniae strain SWU02]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCATG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment