Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   CPG34_RS00545 Genome accession   NZ_CP023545
Coordinates   119795..121693 (-) Length   632 a.a.
NCBI ID   WP_002794684.1    Uniprot ID   -
Organism   Campylobacter coli strain CFSAN032805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 114795..126693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPG34_RS00515 (CPG34_00515) map 114826..115584 (+) 759 WP_002778854.1 type I methionyl aminopeptidase -
  CPG34_RS00520 (CPG34_00520) - 115905..116405 (-) 501 WP_002778855.1 flagellar FLiS export co-chaperone -
  CPG34_RS00525 (CPG34_00525) - 116457..117059 (-) 603 WP_002778856.1 ABC-type transport auxiliary lipoprotein family protein -
  CPG34_RS00530 (CPG34_00530) - 117056..117952 (-) 897 WP_002781970.1 MlaD family protein -
  CPG34_RS00535 (CPG34_00535) - 117955..118677 (-) 723 WP_002781968.1 ABC transporter ATP-binding protein -
  CPG34_RS00540 (CPG34_00540) - 118678..119793 (-) 1116 WP_002781966.1 ABC transporter permease -
  CPG34_RS00545 (CPG34_00545) recP/tkt 119795..121693 (-) 1899 WP_002794684.1 transketolase Machinery gene
  CPG34_RS00550 (CPG34_00550) - 121703..122542 (-) 840 WP_002794686.1 polyprenyl synthetase family protein -
  CPG34_RS00555 (CPG34_00555) - 122539..123630 (-) 1092 WP_002778863.1 PDZ domain-containing protein -
  CPG34_RS00560 (CPG34_00560) - 123627..123932 (-) 306 WP_002794689.1 YbaB/EbfC family nucleoid-associated protein -
  CPG34_RS00565 (CPG34_00565) - 123936..125219 (-) 1284 WP_002790243.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  CPG34_RS00570 (CPG34_00570) - 125203..125760 (-) 558 WP_002781959.1 hypothetical protein -
  CPG34_RS00575 (CPG34_00575) - 125747..126019 (-) 273 WP_002778869.1 NifU family protein -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69560.25 Da        Isoelectric Point: 5.8241

>NTDB_id=208182 CPG34_RS00545 WP_002794684.1 119795..121693(-) (recP/tkt) [Campylobacter coli strain CFSAN032805]
MDLSILQEQANTLRFLSADMVQKANSGHPGAPLGMADILTVLSYHLSHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YNLSLDDIKNFRQLHSKTPGHPEISTQGVEIATGPLGQGIANAVGFAMAAKKAQNLLGKELINHKVYCLCGDGDLQEGIS
YEACSLAGLHKLDNLIIIYDSNEISIEGDVSLAFNEDVKMRFESQGFEVLSIDGHDYEAIDKALKQAKEANKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEKAGFDPNLNFYIPKAAKIRFESAVELGDLEEAKWKDKLEKSEKKELLEKL
LNPDFSKINYPDFKGKDLATRDSNGEILNALAKDLEGFLGGSADLAPSNKTELYGMGDFAEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKVKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPVFGDVKNGAYLLKESKDAKFTLLASGSEVSLCLESANELEKQGFACNVISMP
CFELFEKQDKAYKDRLLQGEVIGVEAAHSNELYKFCDRVYGIESFGESGKDKDVFEHFGFSVPQILNFILDK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=208182 CPG34_RS00545 WP_002794684.1 119795..121693(-) (recP/tkt) [Campylobacter coli strain CFSAN032805]
ATGGATCTATCGATATTACAAGAACAAGCAAATACTTTAAGATTTTTAAGTGCCGATATGGTGCAAAAGGCTAATTCAGG
CCACCCAGGTGCACCCTTGGGAATGGCTGATATTTTAACGGTTTTAAGTTATCATCTTTCTCATAATCCTAAAAACCCAA
CTTGGCTAAACCGCGATAGGCTTGTGTTTTCAGGCGGACATGCCAGTGCTTTGCTTTATAGCTTTTTGCATTTAAGTGGT
TATAATTTAAGTTTAGATGATATTAAAAATTTCCGCCAACTTCATTCAAAAACTCCAGGCCATCCTGAAATTTCAACTCA
AGGAGTAGAGATTGCTACGGGCCCATTAGGACAAGGTATAGCTAATGCTGTAGGCTTTGCTATGGCAGCTAAAAAAGCTC
AAAACTTACTAGGAAAAGAATTAATCAATCACAAGGTTTATTGTCTTTGTGGAGATGGGGATTTACAAGAGGGAATTTCT
TATGAAGCGTGTTCTTTAGCAGGACTTCATAAACTTGATAATTTAATCATCATCTATGATAGCAATGAAATTTCTATCGA
AGGAGATGTAAGCTTAGCCTTTAATGAAGATGTAAAAATGCGTTTTGAGTCACAAGGCTTTGAAGTTTTAAGTATCGATG
GACACGATTATGAAGCAATTGATAAGGCTCTAAAACAAGCTAAAGAAGCCAACAAACCTTGCCTTATCATCGCAAAAACA
ACCATAGCAAAAGGCGCAGGAGAGCTTGAAGGAAGTCACAAAAGCCACGGCGCACCTTTGGGTGAAGAGGTTATTAAAAA
AGCCAAAGAAAAAGCAGGATTTGATCCAAATTTAAATTTTTATATACCTAAAGCAGCAAAAATTCGCTTCGAAAGTGCTG
TAGAACTTGGAGATTTAGAAGAAGCTAAATGGAAAGATAAGCTCGAAAAATCAGAAAAAAAAGAACTCTTAGAAAAACTT
TTAAATCCTGATTTTAGCAAGATAAATTATCCTGATTTTAAAGGCAAGGATTTAGCTACAAGAGATAGTAATGGAGAAAT
TTTAAATGCTCTAGCTAAAGATTTGGAAGGATTTTTAGGCGGAAGTGCGGACTTAGCCCCATCTAATAAAACCGAACTTT
ATGGAATGGGTGATTTTGCGGAAGGAAAAAATATTCATTTTGGTATCAGAGAACACGCTATGGCTGCGATCAATAATGCC
TTTGCAAGATATGGAATTTTCTTACCTTTTTCAGCAACATTTTTTATCTTTAGCGAATATTTAAAACCCGCAGCTAGGAT
AGCAGCTTTAATGAAAGTCAAACATTTTTTCATTTTCACACATGATAGCATAGGCGTTGGCGAAGATGGACCAACTCATC
AACCTATCGAACAACTCAGCACTTTTAGAGCTATGCCAAATTTCTTAACCTTTAGACCAGCTGATGGAGTGGAAAATGTT
AAAGCTTGGCAAATAGCTTTAAATGCAGATATTCCAAGTGCTTTTGTACTTTCACGCCAAAAGCTTAAGGCTTTAAATGA
ACCTGTTTTTGGTGATGTAAAAAACGGGGCGTATTTACTTAAAGAAAGTAAAGATGCTAAATTTACGCTTTTAGCAAGCG
GAAGTGAGGTTTCTCTTTGCTTAGAAAGTGCAAATGAATTAGAAAAACAAGGCTTTGCTTGTAATGTAATCTCCATGCCT
TGTTTTGAACTCTTTGAAAAGCAAGATAAAGCTTATAAAGATAGGCTTTTACAGGGTGAAGTTATAGGGGTTGAAGCAGC
ACATTCTAATGAGCTTTATAAATTCTGCGATAGGGTTTATGGCATAGAAAGTTTTGGAGAAAGTGGTAAAGATAAAGATG
TATTTGAGCATTTTGGTTTTAGCGTTCCACAAATTTTAAATTTCATTCTCGATAAGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)

Transketolase, C-terminal domain (Transketolase_C)

(522-625)

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.123

100

0.411

Multiple sequence alignment