Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BB788_RS17480 Genome accession   NZ_CP018337
Coordinates   3347177..3347773 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae isolate Kp_Goe_154414     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3342177..3352773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB788_RS17465 (BB788_17315) helD 3342385..3344439 (-) 2055 WP_014907883.1 DNA helicase IV -
  BB788_RS17470 (BB788_17320) - 3344564..3345010 (+) 447 WP_002898425.1 YccF domain-containing protein -
  BB788_RS17475 (BB788_17325) yccS 3345028..3347163 (+) 2136 WP_073557904.1 YccS family putative transporter -
  BB788_RS17480 (BB788_17330) sxy/tfoX 3347177..3347773 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  BB788_RS17490 (BB788_17340) sulA 3348122..3348631 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  BB788_RS17495 (BB788_17345) ompA 3348984..3350054 (+) 1071 WP_002898408.1 porin OmpA -
  BB788_RS17500 (BB788_17350) matP 3350186..3350638 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  BB788_RS17505 (BB788_17355) - 3350824..3352581 (+) 1758 WP_073557905.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=208170 BB788_RS17480 WP_004179217.1 3347177..3347773(-) (sxy/tfoX) [Klebsiella pneumoniae isolate Kp_Goe_154414]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=208170 BB788_RS17480 WP_004179217.1 3347177..3347773(-) (sxy/tfoX) [Klebsiella pneumoniae isolate Kp_Goe_154414]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment