Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CPG33_RS04150 Genome accession   NZ_CP023543
Coordinates   777398..777892 (+) Length   164 a.a.
NCBI ID   WP_002857890.1    Uniprot ID   Q9PN97
Organism   Campylobacter jejuni strain CFSAN032806     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 772398..782892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPG33_RS04135 (CPG33_04135) - 773784..774962 (-) 1179 WP_002875346.1 metal-dependent hydrolase -
  CPG33_RS04140 (CPG33_04140) gpsA 774972..775868 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CPG33_RS04145 (CPG33_04145) gatB 775865..777283 (-) 1419 WP_002875345.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CPG33_RS04150 (CPG33_04150) luxS 777398..777892 (+) 495 WP_002857890.1 S-ribosylhomocysteine lyase Regulator
  CPG33_RS04155 (CPG33_04155) - 778204..779196 (+) 993 WP_002858100.1 isopenicillin N synthase family oxygenase -
  CPG33_RS04160 (CPG33_04160) - 779207..779977 (+) 771 WP_057036718.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CPG33_RS04165 (CPG33_04165) metE 779989..782253 (+) 2265 WP_057036719.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18209.18 Da        Isoelectric Point: 6.6314

>NTDB_id=208152 CPG33_RS04150 WP_002857890.1 777398..777892(+) (luxS) [Campylobacter jejuni strain CFSAN032806]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=208152 CPG33_RS04150 WP_002857890.1 777398..777892(+) (luxS) [Campylobacter jejuni strain CFSAN032806]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTACCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707