Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BS103_RS16175 Genome accession   NZ_CP018332
Coordinates   3358563..3359204 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain A1296     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3353563..3364204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS103_RS16155 (BS103_16140) aroK 3354479..3355048 (-) 570 WP_000643712.1 shikimate kinase AroK -
  BS103_RS16160 (BS103_16145) pilQ 3355060..3357225 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  BS103_RS16165 (BS103_16150) pilP 3357288..3357815 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  BS103_RS16170 (BS103_16155) pilO 3357826..3358566 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  BS103_RS16175 (BS103_16160) pilN 3358563..3359204 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  BS103_RS16180 (BS103_16165) pilM 3359204..3360262 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  BS103_RS16185 (BS103_16170) ponA 3360426..3362981 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  BS103_RS16190 (BS103_16175) - 3362999..3363823 (-) 825 WP_002125608.1 putative RNA methyltransferase -
  BS103_RS16195 (BS103_16180) - 3363826..3364158 (-) 333 WP_000169599.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=208134 BS103_RS16175 WP_000201224.1 3358563..3359204(-) (pilN) [Acinetobacter baumannii strain A1296]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=208134 BS103_RS16175 WP_000201224.1 3358563..3359204(-) (pilN) [Acinetobacter baumannii strain A1296]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment