Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR208_RS20015 Genome accession   NZ_CP023541
Coordinates   4104665..4105141 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4099665..4110141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR208_RS19985 (AWA97_21010) - 4099832..4102348 (+) 2517 WP_024199658.1 hypothetical protein -
  CR208_RS19990 (AWA97_21015) - 4102424..4102879 (+) 456 WP_000581507.1 IrmA family protein -
  CR208_RS19995 (AWA97_21020) - 4102958..4103191 (+) 234 WP_001119729.1 DUF905 family protein -
  CR208_RS20005 (AWA97_21030) - 4103291..4104109 (+) 819 WP_001234626.1 DUF932 domain-containing protein -
  CR208_RS20010 (AWA97_21035) - 4104164..4104649 (+) 486 WP_000849590.1 antirestriction protein -
  CR208_RS20015 (AWA97_21040) radC 4104665..4105141 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  CR208_RS20020 (AWA97_21045) - 4105204..4105425 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  CR208_RS20025 (AWA97_21050) - 4105588..4105962 (+) 375 WP_001280952.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CR208_RS20030 (AWA97_21055) - 4106009..4106386 (+) 378 WP_000854902.1 TA system toxin CbtA family protein -
  CR208_RS20035 (AWA97_21060) - 4106383..4106871 (+) 489 WP_000779175.1 DUF5983 family protein -
  CR208_RS20040 (AWA97_21065) - 4106883..4107080 (+) 198 WP_000839249.1 DUF957 domain-containing protein -
  CR208_RS20045 (AWA97_21070) - 4107165..4108007 (+) 843 WP_001280537.1 DUF4942 domain-containing protein -
  CR208_RS20050 (AWA97_21075) yghD 4108350..4108886 (-) 537 WP_000942795.1 GspM family type II secretion system protein YghD -
  CR208_RS20055 (AWA97_21080) gspL 4108888..4110066 (-) 1179 WP_000094963.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=208117 CR208_RS20015 WP_001186725.1 4104665..4105141(+) (radC) [Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=208117 CR208_RS20015 WP_001186725.1 4104665..4105141(+) (radC) [Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178]
ATGCAGCAGCTTTCCTTTCTGCCTGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCTCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment