Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CR208_RS14200 Genome accession   NZ_CP023541
Coordinates   2918681..2920108 (+) Length   475 a.a.
NCBI ID   WP_077710236.1    Uniprot ID   -
Organism   Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2913681..2925108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR208_RS14170 (AWA97_14985) pduU 2914057..2914407 (+) 351 WP_000211395.1 propanediol utilization microcompartment protein PduU -
  CR208_RS14175 (AWA97_14990) - 2914412..2914855 (+) 444 WP_021292835.1 EutP/PduV family microcompartment system protein -
  CR208_RS14180 (AWA97_14995) tmaR 2914956..2915285 (-) 330 WP_000450409.1 DUF496 family protein -
  CR208_RS14185 (AWA97_15000) yeeA 2915457..2916515 (-) 1059 WP_001200891.1 FUSC family protein -
  CR208_RS14190 (AWA97_15005) sbmC 2916714..2917187 (-) 474 WP_021292836.1 DNA gyrase inhibitor SbmC -
  CR208_RS14195 (AWA97_15010) dacD 2917306..2918472 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CR208_RS14200 (AWA97_15015) sbcB 2918681..2920108 (+) 1428 WP_077710236.1 exodeoxyribonuclease I Machinery gene
  CR208_RS14205 (AWA97_15020) tsuB 2920151..2920378 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CR208_RS14210 (AWA97_15025) tsuA 2920392..2921450 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  CR208_RS14215 (AWA97_15030) plaP 2921629..2922987 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CR208_RS14220 yoeI 2922977..2923039 (-) 63 WP_010723108.1 membrane protein YoeI -
  CR208_RS14225 (AWA97_15035) yeeY 2923254..2924183 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CR208_RS14230 (AWA97_15040) yeeZ 2924229..2925053 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54541.87 Da        Isoelectric Point: 5.4720

>NTDB_id=208100 CR208_RS14200 WP_077710236.1 2918681..2920108(+) (sbcB) [Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDIWPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=208100 CR208_RS14200 WP_077710236.1 2918681..2920108(+) (sbcB) [Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTGGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCCGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment