Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CO706_RS28915 Genome accession   NZ_CP023535
Coordinates   5258670..5259146 (+) Length   158 a.a.
NCBI ID   WP_001186756.1    Uniprot ID   A0A0H2VD88
Organism   Escherichia coli strain FDAARGOS_403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5253670..5264146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO706_RS28880 (CO706_28880) - 5254487..5255557 (+) 1071 WP_000102638.1 patatin-like phospholipase family protein -
  CO706_RS28885 (CO706_28885) - 5255691..5256374 (+) 684 WP_000775510.1 hypothetical protein -
  CO706_RS28890 (CO706_28890) - 5256390..5256800 (+) 411 WP_000846716.1 hypothetical protein -
  CO706_RS28900 (CO706_28900) - 5257021..5257842 (+) 822 WP_001241709.1 DUF932 domain-containing protein -
  CO706_RS28905 (CO706_28905) - 5257842..5258087 (+) 246 WP_001164966.1 hypothetical protein -
  CO706_RS28910 (CO706_28910) - 5258181..5258654 (+) 474 WP_000855049.1 antirestriction protein -
  CO706_RS28915 (CO706_28915) radC 5258670..5259146 (+) 477 WP_001186756.1 RadC family protein Machinery gene
  CO706_RS28920 (CO706_28920) - 5259209..5259430 (+) 222 WP_000692357.1 DUF987 domain-containing protein -
  CO706_RS28925 (CO706_28925) cbeA 5259506..5259859 (+) 354 WP_001285568.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CO706_RS28930 (CO706_28930) - 5259950..5260324 (+) 375 WP_000771609.1 TA system toxin CbtA family protein -
  CO706_RS28935 (CO706_28935) - 5260321..5260812 (+) 492 WP_000976860.1 DUF5983 family protein -
  CO706_RS28940 (CO706_28940) - 5260824..5261021 (+) 198 WP_000839270.1 DUF957 domain-containing protein -
  CO706_RS28945 (CO706_28945) - 5261106..5261948 (+) 843 WP_001274560.1 DUF4942 domain-containing protein -
  CO706_RS28955 (CO706_28955) ghrA 5262419..5263357 (+) 939 WP_000351313.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.31 Da        Isoelectric Point: 7.6149

>NTDB_id=208055 CO706_RS28915 WP_001186756.1 5258670..5259146(+) (radC) [Escherichia coli strain FDAARGOS_403]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=208055 CO706_RS28915 WP_001186756.1 5258670..5259146(+) (radC) [Escherichia coli strain FDAARGOS_403]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCTTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VD88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399