Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CO706_RS17190 Genome accession   NZ_CP023535
Coordinates   3008984..3009652 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain FDAARGOS_403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3003984..3014652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO706_RS17160 (CO706_17160) rfaQ 3004162..3005220 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CO706_RS17165 (CO706_17165) waaA 3005633..3006910 (+) 1278 WP_000891571.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CO706_RS17170 (CO706_17170) coaD 3006918..3007397 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CO706_RS17175 (CO706_17175) mutM 3007436..3008245 (-) 810 WP_001114546.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CO706_RS17180 (CO706_17180) rpmG 3008343..3008510 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CO706_RS17185 (CO706_17185) rpmB 3008531..3008767 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CO706_RS17190 (CO706_17190) radC 3008984..3009652 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  CO706_RS17195 (CO706_17195) coaBC 3009824..3011044 (+) 1221 WP_000050117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CO706_RS17200 (CO706_17200) dut 3011022..3011480 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CO706_RS17205 (CO706_17205) slmA 3011587..3012183 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CO706_RS17210 (CO706_17210) pyrE 3012220..3012861 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CO706_RS17215 (CO706_17215) rph 3012927..3013643 (-) 717 WP_001247089.1 ribonuclease PH -
  CO706_RS17225 (CO706_17225) yicC 3013770..3014633 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=208016 CO706_RS17190 WP_001298959.1 3008984..3009652(-) (radC) [Escherichia coli strain FDAARGOS_403]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=208016 CO706_RS17190 WP_001298959.1 3008984..3009652(-) (radC) [Escherichia coli strain FDAARGOS_403]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment