Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BSZ04_RS16420 Genome accession   NZ_CP018312
Coordinates   1551247..1552752 (+) Length   501 a.a.
NCBI ID   WP_088880861.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain B64D1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1535402..1571214 1551247..1552752 within 0


Gene organization within MGE regions


Location: 1535402..1571214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS16340 (BSZ04_16140) - 1535402..1537420 (-) 2019 WP_088880854.1 methyl-accepting chemotaxis protein -
  BSZ04_RS16345 (BSZ04_16145) - 1537570..1538049 (+) 480 WP_088880855.1 NlpC/P60 family protein -
  BSZ04_RS16350 (BSZ04_16150) - 1538086..1538430 (-) 345 WP_010448125.1 DUF3802 family protein -
  BSZ04_RS16355 (BSZ04_16155) - 1538557..1539531 (-) 975 WP_038884166.1 GGDEF domain-containing protein -
  BSZ04_RS16360 (BSZ04_16160) - 1539531..1540502 (-) 972 WP_010448129.1 response regulator -
  BSZ04_RS16365 (BSZ04_16165) - 1540727..1541593 (+) 867 WP_010448131.1 fructosamine kinase family protein -
  BSZ04_RS16370 (BSZ04_16170) - 1541859..1542053 (+) 195 WP_010448133.1 CPXCG motif-containing cysteine-rich protein -
  BSZ04_RS16375 (BSZ04_16175) - 1542147..1542758 (-) 612 WP_088880856.1 riboflavin synthase subunit alpha -
  BSZ04_RS16380 (BSZ04_16180) - 1543040..1544410 (+) 1371 WP_088880857.1 MATE family efflux transporter -
  BSZ04_RS16385 (BSZ04_16185) - 1544510..1545523 (+) 1014 WP_088880858.1 DUF3080 domain-containing protein -
  BSZ04_RS16390 (BSZ04_16190) - 1545526..1546362 (-) 837 WP_162531067.1 DNA ligase -
  BSZ04_RS16395 (BSZ04_16195) - 1546744..1547061 (+) 318 WP_010448144.1 STAS domain-containing protein -
  BSZ04_RS16400 (BSZ04_16200) - 1547095..1547928 (+) 834 WP_071235403.1 OmpA family protein -
  BSZ04_RS16405 (BSZ04_16205) - 1547952..1550030 (+) 2079 WP_420186073.1 SLBB domain-containing protein -
  BSZ04_RS16410 (BSZ04_16210) - 1550030..1550710 (+) 681 WP_088880860.1 tyrosine-protein kinase family protein -
  BSZ04_RS16415 (BSZ04_16215) - 1550724..1551101 (+) 378 WP_071235406.1 Hpt domain-containing protein -
  BSZ04_RS16420 (BSZ04_16220) luxO 1551247..1552752 (+) 1506 WP_088880861.1 sigma-54-dependent transcriptional regulator Regulator
  BSZ04_RS16425 (BSZ04_16225) - 1552733..1553779 (+) 1047 WP_088880862.1 glycosyltransferase family 4 protein -
  BSZ04_RS16430 (BSZ04_16230) - 1553975..1555159 (+) 1185 WP_088880863.1 glycosyltransferase -
  BSZ04_RS16435 (BSZ04_16235) - 1555172..1556338 (+) 1167 WP_088880864.1 glycosyltransferase family 4 protein -
  BSZ04_RS16440 (BSZ04_16240) - 1556331..1557761 (+) 1431 WP_088880865.1 lipopolysaccharide biosynthesis protein -
  BSZ04_RS16445 (BSZ04_16245) - 1557758..1559155 (+) 1398 WP_162531068.1 O-antigen ligase family protein -
  BSZ04_RS16450 (BSZ04_16250) - 1559234..1560352 (+) 1119 WP_088880866.1 glycosyltransferase -
  BSZ04_RS16455 (BSZ04_16255) - 1560349..1561776 (+) 1428 WP_088880867.1 GumC family protein -
  BSZ04_RS16460 (BSZ04_16260) - 1561960..1563066 (+) 1107 WP_088880868.1 glycosyltransferase -
  BSZ04_RS16465 (BSZ04_16265) - 1563063..1564253 (+) 1191 WP_088880869.1 glycosyltransferase family 2 protein -
  BSZ04_RS16470 (BSZ04_16270) - 1564264..1564896 (+) 633 WP_010448176.1 sugar transferase -
  BSZ04_RS16475 (BSZ04_16275) - 1564918..1565304 (-) 387 WP_071235416.1 ATP-binding protein -
  BSZ04_RS16480 (BSZ04_16280) - 1565558..1568662 (+) 3105 WP_088880870.1 response regulator -
  BSZ04_RS16485 (BSZ04_16285) - 1568674..1569159 (+) 486 WP_088880871.1 hypothetical protein -
  BSZ04_RS16490 (BSZ04_16290) - 1569161..1570213 (+) 1053 WP_088880872.1 porin -
  BSZ04_RS16495 (BSZ04_16295) - 1570276..1571214 (-) 939 WP_088880873.1 DMT family transporter -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56410.06 Da        Isoelectric Point: 6.1652

>NTDB_id=207999 BSZ04_RS16420 WP_088880861.1 1551247..1552752(+) (luxO) [Vibrio rotiferianus strain B64D1]
MRPKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAKQFIERTKPQLVILDIKLPDMSGEDVLDWINENNIQTSVIIA
TAHGSVNLAVNLIQKGAEDFLEKPINADRLKTSVSLHLKRAKLEHLVENIQATFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTTASVFIVGESGTGKEVCAEAIHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGASREMKVDVRIICATNRDPLEEVEQGRFREDLYYRVHVVPIDMPPLSERGSDI
VTLATHFLNTYAKQDKKKFKSLSKEVQTLFKAYAWPGNVRQLQNIIRNIVVLNNEEQVSLSHLPSQLTAKKRAQTDTTSA
NFGRDSVNHVQQVTPSSDLENIETRPSYIDEPIARTHSNNTPYFNDDGSIRPMWEVEREAIQNAINFCDGNVLNAAVMLE
LSPSTVYRKKQAWEADEAKIE

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=207999 BSZ04_RS16420 WP_088880861.1 1551247..1552752(+) (luxO) [Vibrio rotiferianus strain B64D1]
ATGAGACCAAAGGTTTTATTGGTAGAGGATTCAACCTCTCTTGCTATCTTGTATAAACAATATGTTAAAGATGAGCCTTA
TGATATTTTCCATGTTGAAACAGGCAGAGAGGCTAAACAGTTTATTGAACGAACTAAACCTCAACTTGTCATTCTGGACA
TTAAGTTGCCCGATATGTCTGGTGAAGACGTCTTGGATTGGATTAACGAGAACAATATTCAAACCTCGGTAATTATTGCA
ACGGCTCATGGCAGCGTAAATTTAGCGGTCAATCTGATTCAAAAGGGAGCGGAAGACTTTTTAGAGAAGCCCATCAACGC
CGATCGCCTCAAAACATCCGTCTCATTGCACCTCAAGCGGGCGAAGCTCGAACATTTAGTTGAAAACATCCAAGCAACTT
TCGATCGACATAACTATCACGGCTTTATCGGTTCTAGCCTACCAATGCAGGCTGTTTACAAAACAATCGATGCGGTAGCC
CCTACTACAGCCAGTGTGTTCATTGTCGGAGAGAGCGGCACGGGTAAAGAAGTTTGTGCAGAAGCTATCCACCGTCAAAG
TGATCGTCGTGATAAGCCTTTCATTGCTATCAACTGTGGTGCTATTCCGCGAGACCTCATGGAGAGTGAGATATTTGGTC
ATGTCAAAGGAGCATTCACCGGAGCAACCACAGACCGAAAAGGAGCGGCCACACTGGCACATGGTGGTACATTGTTTCTG
GATGAACTATGCGAAATGGAGCTAGAAATGCAAAAAAAGCTCCTGCGCTTCTTACAAACAGGAACCTACACACCACTAGG
TGCTAGCAGAGAAATGAAGGTAGACGTGCGCATTATCTGTGCAACAAACCGAGATCCTCTAGAAGAAGTGGAACAAGGAC
GATTTCGTGAAGATTTGTATTATCGTGTACATGTTGTGCCTATCGATATGCCACCATTATCCGAGAGAGGAAGTGACATA
GTCACACTTGCCACTCACTTCTTGAACACTTACGCAAAACAAGACAAGAAGAAATTCAAATCGTTAAGTAAAGAGGTTCA
AACTCTTTTCAAAGCGTACGCGTGGCCGGGCAATGTGCGACAACTACAAAACATCATTCGCAACATTGTTGTTTTGAATA
ATGAAGAGCAAGTTTCCCTATCCCACTTACCTTCACAGTTAACCGCTAAAAAGAGAGCTCAAACAGACACAACAAGCGCT
AATTTTGGTCGCGATTCAGTAAACCATGTACAGCAGGTCACACCGAGTTCCGACCTAGAAAACATCGAAACACGCCCATC
TTATATCGATGAACCTATCGCGCGTACTCACTCAAACAATACCCCATATTTTAATGACGATGGCAGCATTCGCCCAATGT
GGGAAGTCGAGCGAGAAGCAATTCAAAACGCCATTAACTTCTGTGATGGCAATGTTCTCAATGCCGCTGTAATGCTGGAG
CTAAGTCCATCAACGGTATACCGCAAGAAACAAGCGTGGGAAGCAGATGAGGCCAAAATTGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(453-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.59

97.405

0.483

Multiple sequence alignment