Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   BSZ04_RS11210 Genome accession   NZ_CP018312
Coordinates   454857..458243 (-) Length   1128 a.a.
NCBI ID   WP_010450108.1    Uniprot ID   A0A2K7SNE8
Organism   Vibrio rotiferianus strain B64D1     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 449857..463243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS11195 (BSZ04_11090) - 450141..451166 (-) 1026 WP_010450114.1 ABC transporter permease -
  BSZ04_RS11200 (BSZ04_11095) - 451169..452155 (-) 987 WP_010450112.1 ABC transporter permease -
  BSZ04_RS11205 (BSZ04_11100) - 452327..454009 (-) 1683 WP_010450110.1 ABC transporter substrate-binding protein -
  BSZ04_RS11210 (BSZ04_11105) chiS 454857..458243 (-) 3387 WP_010450108.1 response regulator Regulator
  BSZ04_RS11215 (BSZ04_11110) rsmC 458472..459494 (-) 1023 WP_038883889.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  BSZ04_RS11220 (BSZ04_11115) - 459571..460656 (-) 1086 WP_088880410.1 AI-2E family transporter -
  BSZ04_RS11225 (BSZ04_11120) hemL 461017..462312 (-) 1296 WP_005425271.1 glutamate-1-semialdehyde 2,1-aminomutase -
  BSZ04_RS11230 (BSZ04_11125) erpA 462559..462900 (+) 342 WP_005449174.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 1128 a.a.        Molecular weight: 127301.00 Da        Isoelectric Point: 5.7766

>NTDB_id=207995 BSZ04_RS11210 WP_010450108.1 454857..458243(-) (chiS) [Vibrio rotiferianus strain B64D1]
MFKFYKKQKFKRLQNTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFNRLGQSEEESRENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNYGTNLLTGRYKDAALGRTFKRLSEDVSARRKVNEDYTPVVISDFDVENGKQVAWLGAPI
IQQGYLHSYAMFRLPSNGITKLIAEINRDTPIETLLVGSDHKPRTINTKSNEINNSLIVVDKALQGETSVETYTNGVGED
IMAAFAPISNRGITWALVVQLPEKLAFARVHQLEKLFVIAMFIAIILVIIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNAELESNIKLIQKQNEDLQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLASLVDDLLDYHKMRYGSMDIQKSAVNLPSATQLVLELSSHLLGNKTIRI
INQVPSDLVPVSADPQRLEQVLYNLIGNAIKYTSEGKIVISAGVIDDHIRVQVVDTGQGIPAEQLEHIFEPLIQAGQDST
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPVASEDEISLTQNLSVRGHFQVPENGVEVNEEPSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVTDGPETLELVEKEKPELLLLDIMMPGMSGYQVCSELRKHYDHAELPVIM
LTALNQTEDRVRGFEAGANDYLSKPFNKHELAARIQAHLTASKAEQRRIENKQLESELKQRAQVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLRRSSADELIAPKYLTVKQPHYCGKIDIYVEDVRQNIEADILKLPEGS
GLDVMYIFNVGGGASATRIYNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQDLMREILVDTMIHA
LDYWESATGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSIEFILEHCKEQSPDRSHIEAQRD
KLQRLLTS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=207995 BSZ04_RS11210 WP_010450108.1 454857..458243(-) (chiS) [Vibrio rotiferianus strain B64D1]
ATGTTTAAGTTTTACAAAAAGCAGAAATTTAAGCGACTGCAGAATACTCTCATGACCGCATTTCTGGTCTTAAGTATTAC
GCCTTTGACGATCACTGCGATTTTCTTCCTACAATCACACAGTAAAGATTTACAAGAACAGAGTACATCTCATCTTCTCT
CTGTCCGTGATACTAAGCAGCAGCAAATCTTAGATTATTTTGCAGCCCAAGAAACCGAAGTCATGGGCTTTGTTCGTTCT
GAGCTCGCATACGCGAGCGGCGGACGCTTCTATGGTCTCGTGAATGCATTTAATCGCTTGGGTCAAAGTGAAGAAGAATC
TCGTGAAAATGCACAGCAACGCTACATAAAAGGTAGTGGTGATCAGATAAAAACGTCGATTTTACCCGAATCTTCCAATT
ACGTAGGTAGTGAGCGTTATCGACTACTACATAAACGTTATCACTGGGCATACCTAGAGCTGCTTAAACGTTCTGACTTC
AACGACATTCTATTGGTCGATATTGACGGCAACGTGACGTATTCAATCAACAAAGATGACAACTACGGTACCAACCTACT
AACAGGACGCTATAAAGATGCGGCTTTAGGCAGAACATTCAAGCGTCTATCTGAAGATGTAAGTGCTCGCCGTAAAGTCA
ATGAAGACTATACGCCAGTTGTTATTTCAGACTTTGACGTAGAAAACGGTAAACAAGTTGCTTGGCTTGGCGCTCCAATT
ATCCAACAAGGCTACCTACACAGCTATGCAATGTTCCGCCTACCGAGTAACGGGATCACCAAATTAATAGCGGAGATCAA
CCGTGACACACCTATCGAAACTCTTTTAGTTGGGTCTGATCATAAACCAAGGACAATCAACACCAAAAGTAACGAAATTA
ACAATAGCTTAATTGTGGTTGATAAGGCGCTACAAGGTGAAACTAGCGTAGAAACCTACACCAATGGAGTGGGTGAAGAT
ATCATGGCTGCATTTGCGCCAATCAGCAATCGAGGGATTACTTGGGCGCTAGTTGTTCAATTGCCAGAAAAACTCGCCTT
TGCTCGCGTGCATCAATTAGAAAAGTTGTTTGTTATCGCGATGTTTATCGCCATTATTCTAGTGATTATTGCATCGCACT
ACCTATCTAACTTCATCACATCCCCTTTACTTAAGCTGACTTGGGCAGCAGAGAAAGTATCCGCTGGTGATCTAGATGAA
ACGACTTTTAATACTGAACGAAAAGACGAAATCGGTCGCCTGGCAATCAGCTTCGAACGAATGCAGCGCTCTATCCGCGA
AAAAATCCAGACGATTAAACAACAAAATGCCGAACTAGAGAGCAACATTAAACTCATTCAAAAGCAAAATGAGGATTTGC
AGCTCGCTGATAAGCTCAAAGATGAATTCCTTGCCACCACTTCTCACGAGTTAAGAACACCATTACATGGGATGGTTGGC
ATTGCCGAGACATTAGTTTCTGGCGCGAACGGAGTCATTCCCGCGAGCCAGAAATACCAGCTCGATATCATTATTAAAAG
TGGCCAACGACTCGCCAGCCTAGTTGACGACCTACTTGATTACCATAAGATGCGCTACGGCAGTATGGATATTCAAAAAT
CTGCCGTTAACTTACCAAGTGCTACGCAACTGGTTCTTGAGCTGTCTAGCCACTTGTTAGGCAACAAAACGATTCGGATT
ATCAATCAAGTTCCTAGTGATCTTGTTCCAGTATCGGCCGACCCTCAGCGCTTAGAACAAGTTCTCTATAACCTTATTGG
CAATGCGATTAAGTACACATCTGAAGGTAAAATTGTTATTTCAGCAGGTGTGATAGACGATCACATCCGAGTGCAAGTTG
TAGATACAGGACAAGGGATACCAGCGGAGCAATTAGAGCACATCTTTGAACCTCTGATTCAAGCAGGCCAAGACTCCACC
CGATACCGCCAAGGTGCTGGGCTCGGCCTATCGATCAGCCGTCAATTGATTGAACTGATGGGCGGCTCTCTCTACGTAAG
TAGCCAACCGATGGTTGGTACTACATTTAGTTTCACGCTACCTGTAGCAAGTGAAGATGAGATCTCTCTGACTCAAAACC
TTTCAGTTCGTGGCCATTTCCAGGTGCCAGAAAACGGAGTCGAAGTAAATGAGGAGCCTTCACTTCCGGAGAACCCGGAC
GGTCCACTACTGTATGTTGCTGATGATGAGCCTGTAAACCTACGTGTGCTAGAAAGCTTCTTACGCCTTGAAGGCTACCG
AGTAAGAACGGTAACCGATGGTCCAGAAACACTAGAGCTTGTTGAGAAAGAAAAACCTGAGCTGTTATTGCTTGATATCA
TGATGCCTGGAATGAGTGGCTACCAAGTTTGTAGCGAACTACGTAAACACTACGATCATGCCGAACTTCCCGTCATTATG
CTCACTGCACTCAATCAAACTGAAGATCGTGTTCGAGGATTTGAAGCTGGCGCGAATGACTATTTATCCAAGCCATTCAA
TAAGCATGAACTAGCAGCAAGGATTCAAGCACATTTAACCGCAAGTAAGGCAGAGCAACGTCGAATCGAGAATAAGCAGC
TTGAGAGTGAACTAAAGCAACGCGCTCAAGTAGAAGCTAGCTTGCTAGAAACTCAAGGGCGACTTTTAGAGCAACTAGAG
TCCGCTCCTGAAGCGATCATATGTTTACGGGAAGACCAACGAATTCGATTTGCGAATGAGGCTGCCTGCAAACTGTTTAA
GCGCAGCCTAGAACAGTTGCGACGCTCATCTGCAGACGAGCTTATCGCCCCTAAATATTTGACCGTTAAACAGCCTCATT
ACTGCGGAAAAATTGATATTTATGTTGAAGATGTTCGCCAAAATATTGAAGCGGATATCCTCAAGCTTCCTGAAGGTTCA
GGCCTCGATGTTATGTATATCTTTAACGTTGGAGGGGGGGCAAGCGCGACTCGAATTTACAATCTGGAAACGGCTGTAGA
AGTATTGTCTAGCTATGCATTTGATGGTGATAAAGACCAACTACAAAAGCTGAAGGAACTGGGTGGCGAGTTTACACGCC
TAGCTGATAAAGCGCTGGGTAACAAGAAGGATAAGCAGGATCTAATGCGGGAAATACTGGTTGATACCATGATTCACGCC
CTAGATTACTGGGAGTCTGCTACTGGAGAGAGTAAATTTGCTTTTGCGGAACAAAGCGGCCTTTGGCGAGTGTACTTAGA
CAGAAGCACCCTCCAAACACGAACCTTAGATAAATACCTACGTATCGAGACGCTACCTAAGACTCCTCGTTGGCGAACTG
TACTAAGCTCTATAGAGTTTATTCTTGAGCATTGTAAAGAACAAAGCCCCGATCGTAGCCACATTGAAGCACAGCGCGAT
AAACTGCAGAGGTTACTCACTAGCTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-682)

HAMP domain (HAMP)

(375-427)

Response regulator receiver domain (Response_reg)

(726-836)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K7SNE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

76.439

100

0.765

Multiple sequence alignment