Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BSZ04_RS10935 Genome accession   NZ_CP018312
Coordinates   386713..387231 (+) Length   172 a.a.
NCBI ID   WP_088880387.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain B64D1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 381713..392231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS10925 (BSZ04_10820) gshA 384442..386010 (+) 1569 WP_088880386.1 glutamate--cysteine ligase -
  BSZ04_RS10930 (BSZ04_10825) - 386030..386635 (+) 606 WP_029561033.1 hypothetical protein -
  BSZ04_RS10935 (BSZ04_10830) luxS 386713..387231 (+) 519 WP_088880387.1 S-ribosylhomocysteine lyase Regulator
  BSZ04_RS10940 (BSZ04_10835) - 387314..388588 (-) 1275 WP_010450209.1 HlyC/CorC family transporter -
  BSZ04_RS10945 (BSZ04_10840) - 388744..389538 (-) 795 WP_010450206.1 cytochrome C assembly family protein -
  BSZ04_RS10950 (BSZ04_10845) ffh 389753..391135 (+) 1383 WP_005446242.1 signal recognition particle protein -
  BSZ04_RS10955 (BSZ04_10850) rpsP 391346..391594 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  BSZ04_RS10960 (BSZ04_10855) rimM 391624..392172 (+) 549 WP_005438038.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19110.91 Da        Isoelectric Point: 4.8711

>NTDB_id=207989 BSZ04_RS10935 WP_088880387.1 386713..387231(+) (luxS) [Vibrio rotiferianus strain B64D1]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVALNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=207989 BSZ04_RS10935 WP_088880387.1 386713..387231(+) (luxS) [Vibrio rotiferianus strain B64D1]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCACCAGCAGTTCGTGTGGCGAAAACGATGCAAAC
GCCAAAAGGAGATACCATCACGGTCTTCGATCTGCGCTTCACCGCACCAAACAAAGACATCCTTTCTGAAAAGGGGATTC
ACACTCTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGAGAGCGTTGAGATCATTGATATTTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGACGCTTGGATTGCGGC
GATGGAGGATGTATTGAAAGTGGAAAGTCAAAACAAGATCCCTGAGCTGAATGAGTACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCAAAGAACATTCTAGAAGCGGGCGTGGCGCTAAATAAGAATGATGAATTGGCA
TTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment