Detailed information NTG0207986

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BSZ04_RS10805
• Genome accession: NZ_CP018312
• Coordinates: 363992..364978 (+)
• Length: 328 a.a.
• NCBI ID: WP_010450244.1
• Uniprot ID: A0A2K7SP11
• Organism: Vibrio rotiferianus strain B64D1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 358992..369978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSZ04_RS10770 (BSZ04_10665)	ftsB	359010..359291 (+)	282	WP_088880377.1	cell division protein FtsB	-
BSZ04_RS10775 (BSZ04_10670)	ispD	359293..360003 (+)	711	WP_088880378.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BSZ04_RS10780 (BSZ04_10675)	ispF	360018..360494 (+)	477	WP_088880379.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BSZ04_RS10785 (BSZ04_10680)	truD	360540..361583 (+)	1044	WP_088880380.1	tRNA pseudouridine(13) synthase TruD	-
BSZ04_RS10790 (BSZ04_10685)	surE	361583..362359 (+)	777	WP_071235295.1	5'/3'-nucleotidase SurE	-
BSZ04_RS10795 (BSZ04_10690)	-	362359..362985 (+)	627	WP_010450248.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BSZ04_RS10800 (BSZ04_10695)	nlpD	363000..363911 (+)	912	WP_038885718.1	murein hydrolase activator NlpD	-
BSZ04_RS10805 (BSZ04_10700)	rpoS	363992..364978 (+)	987	WP_010450244.1	RNA polymerase sigma factor RpoS	Regulator
BSZ04_RS10810 (BSZ04_10705)	mutS	365067..367628 (-)	2562	WP_088880381.1	DNA mismatch repair protein MutS	-
BSZ04_RS10815 (BSZ04_10710)	pncC	367714..368196 (+)	483	WP_071235297.1	nicotinamide-nucleotide amidase	-
BSZ04_RS10820 (BSZ04_10715)	recA	368397..369440 (+)	1044	WP_005425359.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37560.57 Da
• Isoelectric Point: 4.8400

>NTDB_id=207986 BSZ04_RS10805 WP_010450244.1 363992..364978(+) (rpoS) [Vibrio rotiferianus strain B64D1]
MSISNTVTKVEEFDYDDAAVGRINNELVKSPSKKEKSSQREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=207986 BSZ04_RS10805 WP_010450244.1 363992..364978(+) (rpoS) [Vibrio rotiferianus strain B64D1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTATGACGATGCAGCAGTAGGCCGCATTAATAACGAACT
TGTAAAATCACCATCCAAAAAAGAGAAGAGCTCGCAAAGAGAGGAATTCGATGCGAGTAATAAGAGCTTAGATGCAACAC
AGCTTTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACAGCAGAAGAAGAAGTACTTTATGCTCGACGTGCATTGCGT
GGCGATGAAGCTGCTCGTAAACGTATGATCGAAAGTAACTTGCGTCTGGTAGTGAAGATCTCTCGCCGCTACAGCAATCG
TGGTCTTGCACTTCTTGATCTCATCGAAGAAGGCAACCTAGGTTTGATCCGTGCGGTAGAGAAATTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCAACGTGGTGGATCCGCCAAACGATCGAGCGTGCGTTGATGAACCAAACTCGTACCATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACCGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGCTAGATATCCCGGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTA
TTAGTTCTGTTGATACACCAATTGGTGGTGACGGCGAGAAAGCGCTGCTGGATATTATTCCTGATGCCAACAATTCAGAC
CCTGAAGTTTCCACTCAGGACGACGACATTAAATCTTCATTGATCCATTGGTTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTTGCACGTCGGTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAAGTGGAAGGCTTACGTCGACTACGTGAGATCTTGATTAAACAAGGTCTGAACATGGAA
AACTTGTTCAACGTAGAAGATGATTAG

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2K7SP11

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.226	100	0.863