Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CO706_RS07690 Genome accession   NZ_CP023535
Coordinates   1145673..1146149 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140673..1151149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO706_RS07655 (CO706_07655) - 1140837..1141742 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  CO706_RS07660 (CO706_07660) - 1141739..1142809 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  CO706_RS07665 (CO706_07665) - 1142945..1143628 (+) 684 WP_000775500.1 hypothetical protein -
  CO706_RS07670 (CO706_07670) - 1143644..1144054 (+) 411 WP_000846713.1 hypothetical protein -
  CO706_RS07680 (CO706_07680) - 1144275..1145096 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  CO706_RS07685 (CO706_07685) - 1145178..1145657 (+) 480 WP_000860076.1 antirestriction protein -
  CO706_RS07690 (CO706_07690) radC 1145673..1146149 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  CO706_RS07695 (CO706_07695) yeeT 1146212..1146433 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  CO706_RS07700 (CO706_07700) cbeA 1146507..1146875 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CO706_RS07705 (CO706_07705) cbtA 1146964..1147337 (+) 374 Protein_1185 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CO706_RS07710 (CO706_07710) yeeW 1147334..1147528 (+) 195 WP_000988600.1 DUF5983 family protein -
  CO706_RS29275 - 1147574..1147654 (+) 81 Protein_1187 hypothetical protein -
  CO706_RS07720 (CO706_07720) - 1148143..1148325 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CO706_RS07725 (CO706_07725) tmaR 1148426..1148755 (-) 330 WP_000450409.1 DUF496 family protein -
  CO706_RS07730 (CO706_07730) - 1148927..1149445 (-) 519 Protein_1190 hypothetical protein -
  CO706_RS07735 (CO706_07735) - 1149540..1150520 (-) 981 WP_000399648.1 IS110-like element IS621 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=207983 CO706_RS07690 WP_001186773.1 1145673..1146149(+) (radC) [Escherichia coli strain FDAARGOS_403]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=207983 CO706_RS07690 WP_001186773.1 1145673..1146149(+) (radC) [Escherichia coli strain FDAARGOS_403]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment