Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   BSZ04_RS01775 Genome accession   NZ_CP018311
Coordinates   358458..359555 (-) Length   365 a.a.
NCBI ID   WP_088879334.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain B64D1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 353458..364555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS01760 (BSZ04_01760) - 354011..354955 (+) 945 WP_088879332.1 DMT family transporter -
  BSZ04_RS01765 (BSZ04_01765) - 355091..355753 (+) 663 WP_045391311.1 PilZ domain-containing protein -
  BSZ04_RS01770 (BSZ04_01770) luxQ 355873..358458 (-) 2586 WP_088879333.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  BSZ04_RS01775 (BSZ04_01775) luxP 358458..359555 (-) 1098 WP_088879334.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  BSZ04_RS01780 (BSZ04_01780) - 359779..360084 (-) 306 WP_010451282.1 GIY-YIG nuclease family protein -
  BSZ04_RS01785 (BSZ04_01785) - 360081..360734 (-) 654 WP_010451280.1 YceH family protein -
  BSZ04_RS01790 (BSZ04_01790) - 360828..361031 (-) 204 WP_010451278.1 hypothetical protein -
  BSZ04_RS01795 (BSZ04_01795) - 361269..361583 (+) 315 WP_005453573.1 DUF496 family protein -
  BSZ04_RS01800 (BSZ04_01800) - 361707..363044 (+) 1338 WP_088879335.1 MATE family efflux transporter -
  BSZ04_RS01805 (BSZ04_01805) - 363109..364101 (-) 993 WP_088879336.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41651.06 Da        Isoelectric Point: 5.5550

>NTDB_id=207970 BSZ04_RS01775 WP_088879334.1 358458..359555(-) (luxP) [Vibrio rotiferianus strain B64D1]
MKKALIFSLFSLIGVSSNAYSTQVLDGYWAYQEYLEQYPNQRALTEKLGDAVRNYPVPLNAEQRHPLKISVVYPGQQVSD
YWVRNIEAFEKRLDKLKISYQINQVFTRPNADIKQQSMSLMEALKSKSDYLIFTLDTTRHRKFIEHVLDSSETKLILQNI
TTPVREWEKRQPFLYVGFDHAEGSRALAKEFGKRFKKESKFSVLYFSEGYISDVRGDTFIEQVTRDNGFALESAFYTKAT
KSSGYQAAKLSLEKYPDIDFMYACSTDVALGAAEALDDLGRDDIMINGWGGGSAELNAIQRGQLDFTVMRMNDDTGIAMA
EAIKWDLEGQSVPTVFSGDFEVVTKSDAPERIEQLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=207970 BSZ04_RS01775 WP_088879334.1 358458..359555(-) (luxP) [Vibrio rotiferianus strain B64D1]
ATGAAAAAAGCGCTTATATTTTCGCTATTCTCCTTAATTGGTGTTTCTTCAAACGCCTACTCAACCCAGGTACTAGACGG
GTACTGGGCATATCAGGAGTATTTAGAACAATATCCAAACCAGCGAGCTCTCACTGAAAAGTTGGGGGATGCTGTTAGAA
ATTATCCGGTTCCGCTCAACGCAGAGCAGCGCCACCCTCTCAAAATATCGGTTGTTTATCCTGGGCAACAAGTCTCTGAT
TACTGGGTGAGAAATATTGAAGCTTTTGAGAAAAGGCTAGATAAGCTGAAGATTAGCTACCAGATTAACCAGGTTTTTAC
GCGGCCAAATGCTGATATCAAGCAGCAAAGCATGTCATTAATGGAAGCTCTCAAGAGTAAATCTGACTATTTGATTTTTA
CGCTTGATACGACTCGCCATCGTAAATTTATTGAGCATGTTCTAGACTCATCAGAAACCAAACTCATTTTGCAGAACATC
ACCACACCAGTGAGAGAGTGGGAGAAAAGGCAGCCATTTCTCTATGTTGGTTTTGATCATGCTGAAGGGAGTCGTGCACT
AGCCAAAGAGTTTGGAAAACGATTCAAAAAAGAGAGTAAATTCAGTGTGTTGTATTTCTCTGAGGGATACATTAGTGATG
TCCGAGGGGATACGTTTATTGAGCAGGTTACTCGTGACAATGGTTTTGCCCTGGAGTCGGCCTTCTATACAAAAGCGACA
AAATCTTCCGGGTATCAAGCCGCTAAACTGAGCTTAGAAAAATATCCTGATATTGACTTTATGTACGCCTGCTCAACCGA
CGTGGCACTTGGTGCAGCTGAAGCGTTAGATGATCTTGGTCGCGATGATATTATGATTAATGGTTGGGGTGGCGGCTCGG
CGGAGCTTAACGCTATTCAACGTGGTCAGCTTGATTTTACTGTTATGCGAATGAATGATGATACAGGTATTGCAATGGCT
GAAGCGATAAAGTGGGATTTAGAAGGACAGTCTGTACCAACCGTATTTTCTGGTGATTTTGAGGTGGTGACTAAGTCAGA
CGCACCTGAACGAATTGAACAACTCAAGAAACGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

99.726

0.63

Multiple sequence alignment