Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   BSZ05_RS22315 Genome accession   NZ_CP018309
Coordinates   1209344..1210438 (+) Length   364 a.a.
NCBI ID   WP_088879040.1    Uniprot ID   -
Organism   Vibrio mediterranei strain QT6D1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204344..1215438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ05_RS22285 (BSZ05_22190) - 1206109..1206687 (+) 579 WP_088878446.1 SOS response-associated peptidase -
  BSZ05_RS22290 (BSZ05_22195) - 1206959..1207204 (-) 246 WP_006072803.1 YgjV family protein -
  BSZ05_RS22295 (BSZ05_22200) - 1207480..1207797 (-) 318 WP_006072802.1 DUF496 family protein -
  BSZ05_RS22300 (BSZ05_22205) - 1207988..1208203 (+) 216 WP_038226781.1 hypothetical protein -
  BSZ05_RS22305 (BSZ05_22210) - 1208254..1208913 (+) 660 WP_038226785.1 YceH family protein -
  BSZ05_RS22310 (BSZ05_22215) - 1208975..1209259 (+) 285 WP_038226787.1 GIY-YIG nuclease family protein -
  BSZ05_RS22315 (BSZ05_22220) luxP 1209344..1210438 (+) 1095 WP_088879040.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  BSZ05_RS22320 (BSZ05_22225) luxQ 1210438..1213032 (+) 2595 WP_088878447.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  BSZ05_RS22325 (BSZ05_22230) - 1213081..1214340 (-) 1260 WP_088878448.1 hydroxymethylglutaryl-CoA reductase -
  BSZ05_RS27110 (BSZ05_22235) - 1214502..1214663 (-) 162 WP_088879041.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41137.15 Da        Isoelectric Point: 4.7709

>NTDB_id=207969 BSZ05_RS22315 WP_088879040.1 1209344..1210438(+) (luxP) [Vibrio mediterranei strain QT6D1]
MYSTLLASMLIPFSAQSVASDILPGYWDYQEYLRAHPVQEQLTNELSEVVRQQPSPLSVEQNKPVTISVVYPGQQVSDYW
VRNIKAFETRMEELGINYELNQVFTRPNIDLRQQSVSLMEAVKNKSGYLIFTLDTTRHRKFIEHVIHSTDTKLILQNITT
PVRAWDENPPFLYVGFDHVIGSHLLSGYFKQRFENSHSYSVLYFSEGYVSDARGGTFIQDMEESGDYQLASSYYTKANKE
SGYKAALSSLQQNPDISFIYACSTDVALGAVDALEKLKRNDIVINGWGGGSAELDAIANNKLDVTVMRMNDDTGVAMAEA
IKWDLEGKPVPTVYSGDFELVTSEDSQSRIDELKKKAFRYSDKS

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=207969 BSZ05_RS22315 WP_088879040.1 1209344..1210438(+) (luxP) [Vibrio mediterranei strain QT6D1]
ATCTATTCAACTTTGCTAGCCTCCATGCTCATTCCTTTCTCCGCTCAGTCGGTAGCGAGTGATATATTGCCAGGTTATTG
GGATTATCAAGAATATCTCCGTGCCCATCCTGTTCAAGAACAGCTTACCAATGAACTTTCTGAGGTTGTTAGGCAACAGC
CATCACCACTCTCTGTCGAGCAAAATAAACCTGTCACAATATCAGTAGTTTACCCCGGTCAACAGGTGTCTGATTATTGG
GTAAGAAACATTAAAGCGTTCGAGACACGTATGGAAGAACTTGGTATTAACTATGAGCTAAACCAAGTTTTTACTCGACC
TAATATAGATTTGCGACAGCAAAGTGTTTCGTTGATGGAAGCGGTGAAAAATAAATCCGGTTATTTGATTTTTACACTAG
ACACGACACGTCATCGTAAGTTTATTGAGCACGTTATTCATTCTACTGATACAAAACTCATCCTGCAGAATATCACTACA
CCAGTGAGAGCATGGGATGAAAACCCTCCATTTCTTTATGTTGGCTTTGACCATGTGATCGGCAGTCATCTACTCTCGGG
TTACTTTAAACAGCGATTTGAAAATAGCCACTCTTATTCTGTTTTGTATTTTTCAGAAGGTTACGTTAGCGATGCACGCG
GTGGTACGTTTATCCAAGACATGGAAGAATCAGGGGACTATCAACTCGCTTCGTCCTATTACACTAAAGCGAATAAAGAG
AGTGGCTACAAGGCGGCATTAAGTAGTTTGCAACAGAACCCAGACATTAGCTTCATTTACGCCTGCTCAACGGATGTAGC
TTTAGGTGCTGTTGATGCCCTAGAGAAACTTAAACGAAATGATATCGTTATTAATGGCTGGGGAGGGGGATCTGCCGAAC
TGGATGCAATCGCTAATAATAAACTTGATGTAACCGTTATGAGAATGAATGACGATACCGGTGTTGCCATGGCGGAAGCC
ATTAAGTGGGATCTTGAAGGAAAACCAGTACCAACGGTTTATTCCGGTGATTTTGAACTGGTTACCAGTGAAGATTCGCA
ATCAAGGATCGATGAATTAAAAAAGAAAGCATTTAGATATTCTGATAAAAGCTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(67-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

67.151

94.505

0.635

Multiple sequence alignment