Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CO703_RS27770 Genome accession   NZ_CP023531
Coordinates   5179280..5179756 (-) Length   158 a.a.
NCBI ID   WP_001388380.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5174280..5184756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO703_RS27735 (CO703_27735) gspL 5174748..5175926 (+) 1179 WP_000094962.1 type II secretion system protein GspL -
  CO703_RS27740 (CO703_27740) yghD 5175928..5176464 (+) 537 WP_000942795.1 GspM family type II secretion system protein YghD -
  CO703_RS27745 (CO703_27745) - 5176745..5177587 (-) 843 WP_001280493.1 DUF4942 domain-containing protein -
  CO703_RS27750 (CO703_27750) - 5177672..5177869 (-) 198 WP_085949090.1 DUF957 domain-containing protein -
  CO703_RS29100 - 5177897..5178094 (-) 198 Protein_4982 DUF5983 family protein -
  CO703_RS27755 (CO703_27755) - 5178091..5178468 (-) 378 WP_001094429.1 TA system toxin CbtA family protein -
  CO703_RS27760 (CO703_27760) - 5178515..5178892 (-) 378 WP_001285616.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CO703_RS27765 (CO703_27765) - 5178972..5179193 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  CO703_RS27770 (CO703_27770) radC 5179280..5179756 (-) 477 WP_001388380.1 RadC family protein Machinery gene
  CO703_RS27775 (CO703_27775) - 5179772..5180245 (-) 474 WP_000855081.1 antirestriction protein -
  CO703_RS27785 (CO703_27785) - 5180547..5181365 (-) 819 WP_001234603.1 DUF932 domain-containing protein -
  CO703_RS27795 (CO703_27795) - 5181465..5181698 (-) 234 WP_001119729.1 DUF905 family protein -
  CO703_RS27800 (CO703_27800) - 5181777..5182232 (-) 456 WP_000581502.1 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17652.26 Da        Isoelectric Point: 6.9859

>NTDB_id=207968 CO703_RS27770 WP_001388380.1 5179280..5179756(-) (radC) [Escherichia coli strain FDAARGOS_401]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=207968 CO703_RS27770 WP_001388380.1 5179280..5179756(-) (radC) [Escherichia coli strain FDAARGOS_401]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACACCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCCCCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TTGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment