Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BSZ05_RS20870 Genome accession   NZ_CP018309
Coordinates   903731..904912 (-) Length   393 a.a.
NCBI ID   WP_088878231.1    Uniprot ID   A0AAN1FKD2
Organism   Vibrio mediterranei strain QT6D1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 898731..909912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ05_RS20855 (BSZ05_20765) moeA 899335..900570 (-) 1236 WP_062455471.1 molybdopterin molybdotransferase MoeA -
  BSZ05_RS20860 (BSZ05_20770) folE 900794..901447 (+) 654 WP_038226529.1 GTP cyclohydrolase I FolE -
  BSZ05_RS20865 (BSZ05_20775) - 901831..903693 (+) 1863 WP_338067215.1 hybrid sensor histidine kinase/response regulator -
  BSZ05_RS20870 (BSZ05_20780) cqsA 903731..904912 (-) 1182 WP_088878231.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BSZ05_RS20875 (BSZ05_20785) - 905136..906023 (-) 888 WP_231896692.1 TDT family transporter -
  BSZ05_RS20880 (BSZ05_20790) clcA 906207..907607 (-) 1401 WP_038226533.1 H(+)/Cl(-) exchange transporter ClcA -
  BSZ05_RS20885 (BSZ05_20795) - 908070..909056 (+) 987 WP_088878233.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43239.11 Da        Isoelectric Point: 5.9775

>NTDB_id=207967 BSZ05_RS20870 WP_088878231.1 903731..904912(-) (cqsA) [Vibrio mediterranei strain QT6D1]
MHLTKIKKALPDFISQKHDFFIADRISSNSDQRPVVCGGRPSKGDVVMQTNDYLNLNSHSEIKEAHIQGIMENDESLLMS
GVYLLGAEKETDFETKLATLTGFDSCLVTQSGWTANVNLLQAICDKDTNVYVDFFAHASLWEGARIAGANVHMFMHNNVR
HLKKQLSKHGSGIILVDSIYSTSGTIAPLVDLVSLAYEYDCALVVDESHSLGTHGPNGAGLVAELGLTEHVDYITASLAK
TFAYRAGAILANNKTNYCVPMVAFPAIFSSAMLPYELKRLSKTFDVIVAADEKRKTLAKNADYLNHKLREIGFSIPSESQ
IIGIDTGDVENTIKAREFFEDNGIFGSVFAPPATPNGRHILRLSINADHTIEELARVVNVCQKAWDNEEIAFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=207967 BSZ05_RS20870 WP_088878231.1 903731..904912(-) (cqsA) [Vibrio mediterranei strain QT6D1]
ATGCACTTAACAAAAATCAAGAAGGCTCTCCCAGACTTTATTTCACAGAAGCATGACTTCTTCATCGCTGACAGAATTAG
TTCTAATTCGGACCAGAGGCCAGTTGTTTGCGGTGGTCGCCCATCAAAGGGTGACGTTGTGATGCAAACAAATGATTATT
TGAATCTCAATAGTCATAGCGAAATCAAGGAAGCTCATATCCAAGGAATCATGGAGAATGATGAAAGCTTACTGATGTCT
GGCGTTTACTTACTCGGAGCCGAAAAAGAAACCGACTTCGAAACTAAGTTAGCAACTTTGACGGGGTTTGATAGTTGCTT
AGTTACTCAGTCAGGTTGGACAGCAAACGTTAATTTGCTTCAAGCAATATGCGATAAAGACACCAATGTATACGTAGATT
TCTTTGCCCACGCCTCACTTTGGGAAGGTGCTCGTATCGCAGGTGCCAATGTTCACATGTTTATGCATAACAACGTGCGT
CATTTAAAGAAGCAACTGAGCAAACATGGTAGCGGCATTATTCTTGTTGATTCTATCTACAGCACAAGTGGAACTATTGC
CCCATTAGTCGATCTGGTCTCTCTTGCTTATGAATACGACTGCGCACTCGTCGTTGATGAATCACATTCATTAGGTACTC
ATGGACCAAATGGTGCAGGTCTCGTTGCTGAGCTAGGCCTAACCGAGCATGTCGACTATATCACTGCTAGTCTAGCGAAG
ACCTTTGCGTACAGAGCAGGTGCTATACTTGCAAACAACAAGACAAATTATTGTGTCCCAATGGTCGCGTTTCCCGCTAT
TTTTAGCTCCGCAATGTTACCTTATGAACTAAAAAGGCTGAGTAAAACGTTTGATGTCATCGTCGCTGCCGATGAGAAGA
GAAAGACATTGGCGAAAAATGCAGATTACCTCAATCACAAGTTACGTGAAATAGGGTTTAGCATTCCGAGTGAGTCCCAG
ATTATTGGCATTGATACTGGTGATGTTGAAAACACTATAAAAGCGAGAGAGTTTTTCGAAGACAACGGTATCTTTGGCTC
TGTTTTTGCTCCACCAGCTACTCCAAACGGTAGACATATTCTCCGTTTATCCATAAATGCAGATCATACAATTGAAGAGC
TTGCGAGAGTCGTAAATGTTTGTCAAAAAGCTTGGGACAATGAAGAGATAGCGTTTAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(48-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

52.713

98.473

0.519

Multiple sequence alignment