Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BSZ05_RS14420 Genome accession   NZ_CP018308
Coordinates   3060176..3061597 (-) Length   473 a.a.
NCBI ID   WP_062460577.1    Uniprot ID   -
Organism   Vibrio mediterranei strain QT6D1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3055176..3066597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ05_RS14395 (BSZ05_14315) - 3056193..3056549 (+) 357 WP_088877287.1 VOC family protein -
  BSZ05_RS14400 (BSZ05_14320) purT 3056627..3057802 (-) 1176 WP_088877288.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BSZ05_RS14405 (BSZ05_14325) cdd 3057960..3058847 (-) 888 WP_088877289.1 cytidine deaminase -
  BSZ05_RS14410 (BSZ05_14330) - 3059024..3059710 (-) 687 WP_006072457.1 CidB/LrgB family autolysis modulator -
  BSZ05_RS14415 (BSZ05_14335) - 3059712..3060077 (-) 366 WP_006072459.1 CidA/LrgA family protein -
  BSZ05_RS14420 (BSZ05_14340) sbcB 3060176..3061597 (-) 1422 WP_062460577.1 exodeoxyribonuclease I Machinery gene
  BSZ05_RS14425 (BSZ05_14345) - 3061880..3063253 (+) 1374 WP_088877290.1 Na+/H+ antiporter NhaC family protein -
  BSZ05_RS14430 (BSZ05_14350) - 3063544..3064137 (+) 594 WP_006072464.1 GNAT family N-acetyltransferase -
  BSZ05_RS14435 (BSZ05_14355) - 3064566..3065201 (+) 636 WP_062460570.1 alternative oxidase -
  BSZ05_RS14440 (BSZ05_14360) - 3065373..3065966 (+) 594 WP_088877291.1 DJ-1/PfpI family protein -
  BSZ05_RS14445 (BSZ05_14365) - 3065963..3066466 (+) 504 WP_088877292.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54508.68 Da        Isoelectric Point: 4.8559

>NTDB_id=207963 BSZ05_RS14420 WP_062460577.1 3060176..3061597(-) (sbcB) [Vibrio mediterranei strain QT6D1]
MSQHQPTYFFFDYETWGVSPAKDRPCQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQLCQEKGLSEPE
FIAKIHHELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGFTS
FKLEHLSVANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFYSMRQKRKLNELVDIVNMTPLMHVSGMLGKECQYT
SWVVPIAWHPTNQNAVIVADLAKDPQPLLDLDVDALHQRLYTRHDELAPDEKPVPLKLIHLNKCPILAPAKTLTAENAES
IGIDREQCLKNLALIKQHPEIREKLIGLYSIEREFENDGDVDTQLYSGFFSPADKSAMDIIRETDPNNLSALDISFSDPR
IEPLLFRYRARNFPWSLDETEQARWANHCREFFESRIESYMLNMENLVHEHESDEKKLAILKSVYRYVERLVS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=207963 BSZ05_RS14420 WP_062460577.1 3060176..3061597(-) (sbcB) [Vibrio mediterranei strain QT6D1]
ATGTCCCAACACCAACCCACTTATTTCTTTTTCGATTATGAAACATGGGGAGTGAGCCCTGCTAAAGACAGACCTTGTCA
GTTTGCGGGTGTACGGACGGATGAGAACTTTAATATCATTGGTGAGCCATTGGTTATTTACTGCCAGCCACCATCGGACT
ACTTACCTTCTCCCGAAGCAGCATTAATCACAGGTATCACACCACAACTTTGTCAGGAGAAAGGGCTCTCAGAACCAGAG
TTCATTGCTAAGATTCATCACGAACTAGCCACACCAAACACAACAAGCCTTGGTTACAACAGCATTCGCTTTGACGATGA
GGTAACTCGTTATACCTGTTATCGTAACTTCATCGATCCTTACGCATGGAGTTGGCAGAACGGTAACTCACGTTGGGATT
TATTGGATGTTATGCGCGCATGCCACGCACTCCGCCCTGAAGGAATTGAATGGCCGGAGAATGACGAAGGGTTTACCAGT
TTTAAACTTGAACATCTCTCTGTTGCTAATGGTATCGAACACGAAAATGCTCACGATGCCATGGCAGACGTTATTGCAAC
GATAGAACTAGCCAAAAAAGTAAAGGCCGCGCAGCCAAAACTGTTTGACTACTTTTATTCGATGCGTCAAAAGCGAAAAC
TAAACGAACTCGTCGATATCGTGAACATGACACCCTTGATGCATGTATCTGGAATGTTAGGTAAAGAGTGCCAATATACC
AGTTGGGTAGTACCTATCGCGTGGCACCCAACCAATCAAAATGCGGTTATCGTTGCTGATCTGGCCAAAGACCCACAACC
ACTATTAGATTTAGATGTTGATGCATTACATCAGCGCCTATACACCCGACATGATGAACTCGCACCGGACGAGAAACCTG
TCCCGCTTAAACTTATTCATCTCAACAAGTGCCCTATTCTCGCGCCAGCCAAAACGCTCACAGCGGAAAATGCAGAGTCC
ATTGGCATTGACAGAGAGCAGTGTTTGAAGAACCTAGCCCTAATCAAACAACATCCAGAGATCCGTGAAAAACTGATCGG
ACTTTATAGTATTGAGCGCGAGTTTGAGAATGATGGCGACGTAGATACTCAGCTCTACAGCGGCTTTTTCTCGCCAGCAG
ACAAGAGCGCGATGGATATTATTCGCGAAACGGACCCAAACAATCTATCTGCATTAGACATTAGTTTTAGTGATCCTCGT
ATTGAACCGCTGCTATTCAGGTACCGTGCACGCAATTTCCCATGGAGCCTTGATGAAACGGAACAAGCTCGCTGGGCAAA
CCATTGTCGTGAGTTTTTCGAAAGTCGTATTGAAAGCTATATGCTAAATATGGAAAACTTAGTTCACGAACATGAGTCTG
ACGAGAAGAAACTCGCCATACTAAAATCCGTCTACCGCTACGTGGAGCGTCTCGTTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(209-469)

Exonuclease (RNase_T)

(10-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.511

99.366

0.78

Multiple sequence alignment