Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BSZ05_RS08510 Genome accession   NZ_CP018308
Coordinates   1785205..1785723 (+) Length   172 a.a.
NCBI ID   WP_031493706.1    Uniprot ID   A0A240E9Y8
Organism   Vibrio mediterranei strain QT6D1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780205..1790723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ05_RS08500 (BSZ05_08460) - 1780548..1783406 (+) 2859 WP_088876630.1 M16 family metallopeptidase -
  BSZ05_RS08505 (BSZ05_08465) gshA 1783518..1785110 (+) 1593 WP_088876631.1 glutamate--cysteine ligase -
  BSZ05_RS08510 (BSZ05_08470) luxS 1785205..1785723 (+) 519 WP_031493706.1 S-ribosylhomocysteine lyase Regulator
  BSZ05_RS08515 (BSZ05_08475) ruvX 1785814..1786239 (-) 426 WP_006075166.1 Holliday junction resolvase RuvX -
  BSZ05_RS08520 (BSZ05_08480) - 1786282..1786851 (-) 570 WP_031493705.1 YqgE/AlgH family protein -
  BSZ05_RS08525 (BSZ05_08485) gshB 1786869..1787816 (-) 948 WP_088876632.1 glutathione synthase -
  BSZ05_RS08530 (BSZ05_08490) rsmE 1787830..1788561 (-) 732 WP_088876633.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  BSZ05_RS08535 (BSZ05_08495) - 1788642..1789352 (-) 711 WP_006075170.1 endonuclease -
  BSZ05_RS08540 (BSZ05_08500) - 1789450..1789959 (-) 510 WP_088876634.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18896.68 Da        Isoelectric Point: 4.7114

>NTDB_id=207955 BSZ05_RS08510 WP_031493706.1 1785205..1785723(+) (luxS) [Vibrio mediterranei strain QT6D1]
MPLLDSFTVDHTKMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGDAVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLSAMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKAIAEAIIAAGIQVNKNDELA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=207955 BSZ05_RS08510 WP_031493706.1 1785205..1785723(+) (luxS) [Vibrio mediterranei strain QT6D1]
ATGCCACTACTGGATAGCTTCACGGTAGACCACACAAAGATGCACGCACCTGCTGTACGTGTAGCGAAAACAATGCAAAC
CCCAAAAGGCGACACCATCACGGTATTTGACCTACGTTTCACGGCGCCAAACAAAGATATCCTTTCTGAGAAAGGCATCC
ACACCCTTGAGCACCTATACGCTGGCTTTATGCGTGCACATCTAAATGGTGATGCTGTTGAAATCATCGATATTTCTCCA
ATGGGCTGCCGTACAGGTTTCTACATGAGCTTAATAGGTACACCTTCAGAGCAACAAGTAGCGGACGCTTGGTTAAGCGC
GATGCAAGACGTTCTGAAAGTAGAAAGCCAGAACAAGATTCCTGAGCTGAATGAGTATCAGTGTGGTACGGCGGCTATGC
ACTCTTTAGAAGAGGCAAAAGCCATTGCGGAAGCGATTATTGCGGCGGGTATTCAAGTAAACAAAAACGACGAACTGGCT
CTGCCAGAGTCAATGCTTCAAGAATTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240E9Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment