Detailed information NTG0207945

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BSZ05_RS04970
• Genome accession: NZ_CP018308
• Coordinates: 1086463..1087470 (+)
• Length: 335 a.a.
• NCBI ID: WP_006071173.1
• Uniprot ID: A0A084T383
• Organism: Vibrio mediterranei strain QT6D1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1081463..1092470

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSZ05_RS04950 (BSZ05_04940)	metJ	1081558..1081878 (+)	321	WP_006071165.1	met regulon transcriptional regulator MetJ	-
BSZ05_RS04955 (BSZ05_04945)	-	1081942..1083201 (-)	1260	WP_088876322.1	malic enzyme-like NAD(P)-binding protein	-
BSZ05_RS04960 (BSZ05_04950)	rpmE	1083488..1083706 (-)	219	WP_006071169.1	50S ribosomal protein L31	-
BSZ05_RS04965 (BSZ05_04955)	priA	1083990..1086191 (+)	2202	WP_088877622.1	primosomal protein N'	-
BSZ05_RS04970 (BSZ05_04960)	cytR	1086463..1087470 (+)	1008	WP_006071173.1	DNA-binding transcriptional regulator CytR	Regulator
BSZ05_RS04975 (BSZ05_04965)	-	1087553..1088101 (+)	549	WP_088876323.1	SPOR domain-containing protein	-
BSZ05_RS04980 (BSZ05_04970)	hslV	1088330..1088863 (+)	534	WP_006071177.1	ATP-dependent protease subunit HslV	-
BSZ05_RS04985 (BSZ05_04975)	hslU	1088910..1090244 (+)	1335	WP_088876324.1	HslU--HslV peptidase ATPase subunit	-
BSZ05_RS04990 (BSZ05_04980)	-	1090488..1090778 (-)	291	WP_088876325.1	GIY-YIG nuclease family protein	-
BSZ05_RS04995 (BSZ05_04985)	-	1090974..1091891 (+)	918	WP_088876326.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36922.56 Da
• Isoelectric Point: 6.1431

>NTDB_id=207945 BSZ05_RS04970 WP_006071173.1 1086463..1087470(+) (cytR) [Vibrio mediterranei strain QT6D1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQSKKRETSFVNLVFTKQADGMLLLGTDLPFDISKPEQKNLPPIVMACEFAPELELPTVHIDN
LTSAFEAVNYLSQLGHKRIAQISGPDTAFLCRFRQQGYQQALRRAGLQMNPAYTVKGDFTFEAGARLIRSLLALPEPPTA
IFCHNDIMAIGAMQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTVSQPRYEIGRQAMYMMLEVLKGADVRAGSRLLD
TELVIRDSAAPPRIL

Nucleotide

• Length: 1008 bp

>NTDB_id=207945 BSZ05_RS04970 WP_006071173.1 1086463..1087470(+) (cytR) [Vibrio mediterranei strain QT6D1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTCTCAACGGCTACGGTATCAAGAGCATTGATGAATCCCGAGAA
GGTCTCATCATCTACTCGAAAGCGAGTCGAAGATGCCGTTCTCGAAGCTGGCTATTCTCCTAACTCTCTGGCGCGTAACT
TACGTAGGAATGAATCCAAGACGATCGTTACCATAGTGCCAGACATCTGTGACCCGTACTTTTCGGAGATCATTCGTGGT
ATCGAAGATGCAGCAATGGAACATGGGTATTTGGTTCTACTAGGAGATAGCGGACAATCGAAAAAGCGTGAAACCTCGTT
TGTAAACTTGGTCTTCACTAAGCAAGCAGATGGCATGCTTTTACTCGGCACCGACTTGCCTTTTGATATCAGTAAGCCAG
AACAGAAAAACTTACCTCCCATCGTTATGGCCTGTGAGTTTGCCCCTGAACTTGAGCTCCCTACCGTTCATATCGACAAC
CTGACCTCAGCCTTTGAAGCAGTAAACTATTTGTCGCAATTGGGTCATAAGCGTATCGCCCAGATTTCAGGACCTGACAC
CGCATTTTTATGCCGCTTTAGACAGCAAGGTTACCAGCAAGCGTTGCGAAGAGCCGGACTGCAAATGAACCCTGCGTACA
CGGTGAAAGGTGACTTTACCTTTGAAGCGGGTGCGCGTTTGATTCGCAGCCTACTCGCCCTGCCGGAGCCTCCAACAGCC
ATTTTCTGTCATAACGACATCATGGCCATTGGCGCGATGCAAGAAGCGAAGAAACTGGGGCTGCGAGTTCCTCAAGATCT
TTCCGTAGTTGGTTTCGATGACATTCAGTTCGCTCAGTATTGCGATCCTCCGCTTACCACAGTCTCACAACCTCGTTATG
AGATTGGCCGCCAAGCCATGTACATGATGTTAGAAGTACTGAAAGGCGCCGATGTTCGAGCGGGATCGAGGTTACTTGAT
ACTGAACTTGTGATCCGCGACAGTGCTGCTCCTCCAAGAATCCTATAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: A0A084T383

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.157	99.104	0.884
cytR	Vibrio parahaemolyticus RIMD 2210633	87.988	99.403	0.875