Detailed information NTG0207935

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BSZ05_RS03865
• Genome accession: NZ_CP018308
• Coordinates: 860948..861925 (-)
• Length: 325 a.a.
• NCBI ID: WP_038224035.1
• Uniprot ID: A0A084TGX7
• Organism: Vibrio mediterranei strain QT6D1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 855948..866925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSZ05_RS03845 (BSZ05_03840)	-	856249..857766 (-)	1518	WP_088876236.1	inorganic triphosphatase	-
BSZ05_RS03850 (BSZ05_03845)	-	857972..858652 (+)	681	WP_038222611.1	TIGR00153 family protein	-
BSZ05_RS03855 (BSZ05_03850)	-	858777..860039 (+)	1263	WP_038224033.1	inorganic phosphate transporter	-
BSZ05_RS03860 (BSZ05_03855)	-	860262..860873 (+)	612	WP_006072646.1	TIGR04211 family SH3 domain-containing protein	-
BSZ05_RS03865 (BSZ05_03860)	rpoS	860948..861925 (-)	978	WP_038224035.1	RNA polymerase sigma factor RpoS	Regulator
BSZ05_RS03870 (BSZ05_03865)	nlpD	862041..862997 (-)	957	WP_038224037.1	murein hydrolase activator NlpD	-
BSZ05_RS03875 (BSZ05_03870)	-	862998..863621 (-)	624	WP_038224039.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BSZ05_RS03880 (BSZ05_03875)	surE	863626..864390 (-)	765	WP_006072638.1	5'/3'-nucleotidase SurE	-
BSZ05_RS03885 (BSZ05_03880)	truD	864395..865372 (-)	978	WP_088876237.1	tRNA pseudouridine(13) synthase TruD	-
BSZ05_RS03890 (BSZ05_03885)	ispF	865385..865864 (-)	480	WP_088876238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BSZ05_RS03895 (BSZ05_03890)	ispD	865861..866571 (-)	711	WP_006072633.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BSZ05_RS03900 (BSZ05_03895)	ftsB	866568..866849 (-)	282	WP_006072631.1	cell division protein FtsB	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37173.99 Da
• Isoelectric Point: 4.6733

>NTDB_id=207935 BSZ05_RS03865 WP_038224035.1 860948..861925(-) (rpoS) [Vibrio mediterranei strain QT6D1]
MSISNAVTKNENFDVETESTEVVENALTNDESISEDKDMYDASAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALKGDE
AARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLP
IHVVKELNIYLRTARELSQKLDHEPTAEEIAQKLDKPVSDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDSTHSDPEV
STQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLRDILIKQGLNMESLF
NFDDD

Nucleotide

• Length: 978 bp

>NTDB_id=207935 BSZ05_RS03865 WP_038224035.1 860948..861925(-) (rpoS) [Vibrio mediterranei strain QT6D1]
ATGAGTATCAGCAATGCAGTAACCAAAAATGAAAACTTCGACGTTGAAACGGAATCAACGGAGGTTGTCGAAAACGCACT
TACCAACGATGAATCCATTTCTGAAGATAAAGATATGTATGACGCATCGGCGAAAAGCCTGGATGCGACTCAGCTTTACT
TAGGTGAAATTGGATTCTCTCCATTACTTACCGCGGAAGAAGAAGTCCTGTATGCACGGCGTGCCCTAAAGGGTGATGAA
GCTGCTCGCAAACGTATGATCGAAAGTAACCTACGTCTGGTGGTGAAGATCTCTCGACGTTACAGCAATCGTGGACTGGC
GCTGCTTGATCTTATTGAGGAAGGAAACCTTGGTTTGATTCGAGCAGTCGAAAAGTTTGACCCAGAACGAGGCTTCCGTT
TTTCTACTTACGCCACATGGTGGATTCGACAAACGATTGAACGTGCGTTAATGAACCAGACTCGCACCATTCGTCTTCCG
ATTCATGTAGTGAAAGAACTCAATATCTATTTGCGTACTGCTCGTGAGTTATCACAGAAGCTAGACCATGAGCCTACAGC
AGAAGAGATTGCACAGAAGCTTGATAAGCCAGTCAGTGATGTGTCCAAGATGCTACGTCTAAATGAACGTATTAGCTCAG
TAGATACACCGATTGGCGGTGATGGTGAAAAAGCACTCCTAGATATTATTCCTGACTCAACGCATTCAGACCCTGAAGTA
TCGACTCAAGATGATGATATCAAGTCTTCGCTGATTCACTGGCTTGACGAGCTAAACCCTAAGCAGAAAGAAGTACTAGC
ACGACGTTTTGGTCTGCTCGGTTATGAGCCATCGACACTAGAAGAAGTAGGACGTGAGATTAATCTGACCCGTGAACGCG
TGAGACAGATTCAAGTTGAAGGCCTACGTCGACTTCGCGATATCCTTATCAAACAAGGGTTGAATATGGAGTCACTGTTC
AATTTCGATGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (48-81)

• Sigma-70, region 4 (Sigma70_r4) (254-306)

• Sigma-70 region 3 (Sigma70_r3) (166-239)

• Sigma-70 region 2 (Sigma70_r2) (86-155)

3D structure

• AlphaFold DB: A0A084TGX7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.865