Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CO703_RS20785 Genome accession   NZ_CP023531
Coordinates   3835137..3835613 (+) Length   158 a.a.
NCBI ID   WP_001387238.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3830137..3840613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO703_RS20755 (CO703_20755) - 3830643..3831122 (-) 480 Protein_3729 IS3 family transposase -
  CO703_RS20760 (CO703_20760) ltrA 3831206..3832713 (-) 1508 Protein_3730 group II intron reverse transcriptase/maturase -
  CO703_RS20770 (CO703_20770) - 3833385..3834124 (-) 740 Protein_3731 IS3 family transposase -
  CO703_RS29335 - 3834181..3834306 (+) 126 Protein_3732 DUF945 domain-containing protein -
  CO703_RS20780 (CO703_20780) - 3834648..3835121 (+) 474 WP_000855057.1 antirestriction protein -
  CO703_RS20785 (CO703_20785) radC 3835137..3835613 (+) 477 WP_001387238.1 RadC family protein Machinery gene
  CO703_RS20790 (CO703_20790) - 3835700..3835921 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  CO703_RS20795 (CO703_20795) cbeA 3836001..3836378 (+) 378 WP_001285620.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CO703_RS20800 (CO703_20800) - 3836425..3836802 (+) 378 WP_001094430.1 TA system toxin CbtA family protein -
  CO703_RS20805 (CO703_20805) - 3836799..3837287 (+) 489 WP_000761715.1 DUF5983 family protein -
  CO703_RS20810 (CO703_20810) - 3837307..3837504 (+) 198 WP_000772029.1 DUF957 domain-containing protein -
  CO703_RS20815 (CO703_20815) - 3837589..3838431 (+) 843 WP_001290187.1 DUF4942 domain-containing protein -
  CO703_RS30090 - 3838806..3838920 (+) 115 Protein_3741 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17740.41 Da        Isoelectric Point: 7.2519

>NTDB_id=207929 CO703_RS20785 WP_001387238.1 3835137..3835613(+) (radC) [Escherichia coli strain FDAARGOS_401]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=207929 CO703_RS20785 WP_001387238.1 3835137..3835613(+) (radC) [Escherichia coli strain FDAARGOS_401]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCCCCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TTGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392