Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BC497_RS11440 Genome accession   NZ_CP018307
Coordinates   2330960..2331556 (-) Length   198 a.a.
NCBI ID   WP_087653664.1    Uniprot ID   -
Organism   Klebsiella variicola strain X39     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2325960..2336556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC497_RS11425 (BC497_11400) helD 2326168..2328222 (-) 2055 WP_016160584.1 DNA helicase IV -
  BC497_RS11430 (BC497_11405) - 2328347..2328793 (+) 447 WP_012542294.1 YccF domain-containing protein -
  BC497_RS11435 (BC497_11410) yccS 2328811..2330946 (+) 2136 WP_008805895.1 YccS family putative transporter -
  BC497_RS11440 (BC497_11415) sxy/tfoX 2330960..2331556 (-) 597 WP_087653664.1 TfoX/Sxy family DNA transformation protein Regulator
  BC497_RS11450 (BC497_11425) sulA 2331907..2332416 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  BC497_RS11455 (BC497_11430) ompA 2332769..2333821 (+) 1053 WP_008805892.1 porin OmpA -
  BC497_RS11460 (BC497_11435) matP 2333932..2334384 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  BC497_RS11465 (BC497_11440) - 2334570..2336327 (+) 1758 WP_012968609.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22607.14 Da        Isoelectric Point: 10.0610

>NTDB_id=207910 BC497_RS11440 WP_087653664.1 2330960..2331556(-) (sxy/tfoX) [Klebsiella variicola strain X39]
MRKLVCPRFPQFQACVSPLGQLLSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=207910 BC497_RS11440 WP_087653664.1 2330960..2331556(-) (sxy/tfoX) [Klebsiella variicola strain X39]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACTTTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment