Detailed information NTG0207886

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CO703_RS01545
• Genome accession: NZ_CP023531
• Coordinates: 207133..208125 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_401
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 202133..213125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CO703_RS01515 (CO703_01515)	ispD	202194..202904 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CO703_RS01520 (CO703_01520)	ispF	202904..203383 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CO703_RS01525 (CO703_01525)	truD	203380..204429 (+)	1050	WP_000568956.1	tRNA pseudouridine(13) synthase TruD	-
CO703_RS01530 (CO703_01530)	surE	204410..205171 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CO703_RS01535 (CO703_01535)	pcm	205165..205791 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CO703_RS01540 (CO703_01540)	nlpD	205976..207070 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CO703_RS01545 (CO703_01545)	rpoS	207133..208125 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CO703_RS01550 (CO703_01550)	-	208246..208653 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
CO703_RS01555 (CO703_01555)	-	208800..209393 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CO703_RS01560 (CO703_01560)	-	209393..210820 (+)	1428	WP_000863197.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CO703_RS01565 (CO703_01565)	-	210831..211067 (+)	237	WP_000562990.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CO703_RS01570 (CO703_01570)	ygbN	211107..212471 (-)	1365	WP_000104428.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=207886 CO703_RS01545 WP_000081550.1 207133..208125(+) (rpoS) [Escherichia coli strain FDAARGOS_401]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=207886 CO703_RS01545 WP_000081550.1 207133..208125(+) (rpoS) [Escherichia coli strain FDAARGOS_401]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715