Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   BSR56_RS14120 Genome accession   NZ_CP018260
Coordinates   2894448..2894774 (-) Length   108 a.a.
NCBI ID   WP_004637627.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain XH900     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2889448..2899774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR56_RS14100 (BSR56_14225) - 2889752..2890360 (-) 609 WP_035374895.1 FHA domain-containing protein -
  BSR56_RS14105 (BSR56_14230) gspD 2890439..2892649 (-) 2211 WP_100834126.1 type II secretion system secretin GspD -
  BSR56_RS14110 (BSR56_14235) - 2892691..2893530 (-) 840 WP_005087945.1 type II secretion system protein N -
  BSR56_RS14115 (BSR56_14240) gspN 2893530..2894273 (-) 744 WP_026056326.1 type II secretion system protein N -
  BSR56_RS14120 (BSR56_14245) hns 2894448..2894774 (-) 327 WP_004637627.1 H-NS family nucleoid-associated regulatory protein Regulator
  BSR56_RS14125 (BSR56_14250) - 2895204..2895635 (-) 432 WP_005083921.1 acyl-CoA thioesterase -
  BSR56_RS14130 (BSR56_14255) - 2895644..2896837 (-) 1194 WP_005087942.1 hypothetical protein -
  BSR56_RS14135 (BSR56_14260) - 2896843..2897670 (-) 828 WP_005087940.1 hypothetical protein -
  BSR56_RS14140 (BSR56_14265) - 2897667..2898443 (-) 777 WP_005087939.1 uroporphyrinogen-III synthase -
  BSR56_RS14145 (BSR56_14270) hemC 2898443..2899360 (-) 918 WP_005087936.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12251.93 Da        Isoelectric Point: 5.0269

>NTDB_id=207838 BSR56_RS14120 WP_004637627.1 2894448..2894774(-) (hns) [Acinetobacter haemolyticus strain XH900]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=207838 BSR56_RS14120 WP_004637627.1 2894448..2894774(-) (hns) [Acinetobacter haemolyticus strain XH900]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAAGCGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTATCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAGCCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment