Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BSR56_RS13575 Genome accession   NZ_CP018260
Coordinates   2769718..2771943 (+) Length   741 a.a.
NCBI ID   WP_100834093.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain XH900     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2764718..2776943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR56_RS13555 (BSR56_13680) lnt 2765480..2767039 (+) 1560 WP_100834092.1 apolipoprotein N-acyltransferase -
  BSR56_RS13560 (BSR56_13685) - 2767127..2767471 (-) 345 WP_004637735.1 hypothetical protein -
  BSR56_RS13565 (BSR56_13690) gspG 2767735..2768364 (-) 630 WP_004637734.1 type II secretion system major pseudopilin GspG -
  BSR56_RS13570 (BSR56_13695) gspF 2768364..2769569 (-) 1206 WP_075316285.1 type II secretion system inner membrane protein GspF -
  BSR56_RS13575 (BSR56_13700) priA 2769718..2771943 (+) 2226 WP_100834093.1 primosomal protein N' Machinery gene
  BSR56_RS13580 (BSR56_13705) - 2771984..2773801 (+) 1818 WP_100834094.1 cation:proton antiporter -
  BSR56_RS13585 (BSR56_13710) - 2773910..2774782 (+) 873 WP_005083783.1 Hsp33 family molecular chaperone HslO -
  BSR56_RS13590 (BSR56_13715) - 2774892..2775242 (-) 351 WP_100834095.1 hypothetical protein -
  BSR56_RS13595 (BSR56_13720) - 2775406..2776368 (+) 963 WP_100834096.1 DnaJ C-terminal domain-containing protein -
  BSR56_RS13600 (BSR56_13725) - 2776380..2776706 (+) 327 WP_004637727.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84289.29 Da        Isoelectric Point: 8.6534

>NTDB_id=207834 BSR56_RS13575 WP_100834093.1 2769718..2771943(+) (priA) [Acinetobacter haemolyticus strain XH900]
MPSENSNAILYRIRVALPVYVYDTFDYTVSAEQYQQAQIGARVAVSFGRQNLVGIIVEKIDPNEVFTGQFKLKAITELLD
KEAILGQHVLTLMTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKIVPNDDPNALLKRSQKQYDAYQILKIHPHG
TTENVLNLSGVETATLKALEKKGLVECCLEPHDFSPTPVQLAQVPLTANEDQKRAIQQILKEQHHYQAFLLDGLTGSGKT
EVYLQVMYDVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIVIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGYLQHCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVLPKMHV
IDLKIAKKKHGISQNLIEQIKLTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGNVYLQSLRPDHSMLTTLIEHDYRTVAKQMLAERKLAIL
PPYRYTVLVRVESKDREYSQHFLADIVQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=207834 BSR56_RS13575 WP_100834093.1 2769718..2771943(+) (priA) [Acinetobacter haemolyticus strain XH900]
ATGCCTAGCGAAAATTCTAACGCCATTTTGTACCGTATTCGAGTTGCCCTACCCGTATATGTGTATGACACGTTTGACTA
TACGGTCAGTGCCGAACAGTATCAACAAGCACAGATTGGAGCGCGTGTTGCAGTGTCGTTCGGACGACAAAATCTCGTAG
GCATCATTGTTGAAAAAATTGATCCCAATGAAGTTTTCACAGGTCAATTTAAACTGAAAGCAATTACTGAATTACTTGAT
AAAGAAGCAATATTAGGTCAACACGTTTTAACTTTGATGACATGGTCTGCCCAGTACTATCAATTCCCAATTGGCGAAGT
GATGCAAAGTGCCCTTCCCACACTACTCAGACAAGGGCGTGCATTAGACATTTTATTTCATCTATGGAAAATCGTACCTA
ATGATGATCCGAATGCATTATTAAAACGCTCACAAAAACAATACGATGCGTATCAAATCTTAAAAATACATCCTCATGGA
ACCACTGAAAATGTCTTGAACCTCAGTGGTGTTGAAACTGCAACACTGAAAGCTTTAGAGAAGAAAGGGTTAGTTGAATG
TTGTCTGGAACCGCATGATTTTAGCCCCACACCTGTACAATTGGCGCAAGTACCACTCACAGCCAATGAGGATCAAAAAA
GAGCGATTCAACAAATCCTCAAAGAGCAGCATCATTACCAAGCATTTTTACTGGATGGCTTAACAGGCAGTGGCAAAACT
GAAGTTTATCTGCAAGTTATGTATGACGTATTAAAGCAGGGTAAGCAGGTGTTGGTACTGGTTCCGGAAATTGGTCTTAC
CCCTCAAACTGTCGCTCGCTTTAAATCACGTTTTCATTGTGATATTGCTTTATTACATTCAGGTTTAAATGACTCGAAAC
GCTTACAAGCATGGCAACACGCGCAAACAGGTAAAGCTTCGATTGTGATCGGGACTCGTTCTGCGATCTACACGCCGCTT
CCTCATCTCGGACTGATTATCCTCGATGAAGAGCATGATCTTTCTTATAAACAACAAGAAGGCTTTCGTTATCATACCCG
TGATGTAGCGCTCTACAGAGGATACTTACAACACTGCCCTGTAATTCTTGGATCTGCAACACCGAGTATCGATAGCTATC
ATCTGGTCGAGTCAGGCAAACTACATCTACTGGAACTCAATCAACGTGCAGGCGTCGCTGTACTGCCAAAAATGCATGTG
ATTGATTTAAAAATTGCCAAGAAAAAACATGGTATCAGCCAAAATTTAATTGAGCAGATCAAACTCACCTTAGAACGCAA
AGAACAGGTGTTGATCTTTCTCAACCGGCGGGGTTATGCACCAATTCTGATGTGTGAAAGTTGTGGTTGGCAAGCCAATT
GCCCCCATTGTGATGCGCATTTCACCCTTCATTCTCAGCCTTATCATTATTTGCATTGTCATCATTGCGGCACCATCAAT
CGCCTCCCTGATCATTGTCCAGCATGCCAAAAACAAAGTTTAAAAACGATTGGCGCTGGAACAGCAAAGCTTGAAGAGCA
TTTACAAGAGTTATTTCCTCACAATGAAGTGATTCGCGTTGATCGTGACAGTACCAGCCGCGTCGGAAGTTGGCAGAAAA
TTTATGACCGTATCCAACAAAATAAACCGAGTATTTTATTGGGTACGCAAATGCTCGCTAAAGGACATCATTTTCCACAT
GTGACTTTGGTGGCTATTTTAGATATAGATGCTGGCTTGCTTAGCGTCGATATTCGTGCTCCTGAACGTACCGCACAATT
AATTGTACAAGTGGCTGGACGTGCTGGACGAGGCGAACATAAAGGGAATGTCTATTTACAAAGTCTACGCCCTGATCATT
CGATGCTCACCACATTGATTGAACATGACTATCGTACGGTCGCTAAACAAATGCTGGCTGAGCGCAAACTTGCAATACTC
CCACCCTATCGTTATACGGTGTTGGTACGTGTTGAATCGAAAGATCGAGAATATAGCCAGCACTTCTTGGCCGATATTGT
GCAACAACTGAGAACAATGGCTGGCGATTTAGTTGATATTTGGGGCCCCATTCCAGCACCGATGGAACGTAAAGCTGGAC
GTTATCGTGCCCACATGGTGATTTTGTCGGCCGATCGCGCCAAACTGCATTTTTATTTGCGCCAATGGTGGCAACAAGTG
GTACATTTACCTCGTCAACACCAACTCAGGCTATCCATCGATGTTGATCCACAAGAGTTTAGTTAG

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.905

99.19

0.812

Multiple sequence alignment