Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   BSR56_RS13065 Genome accession   NZ_CP018260
Coordinates   2674241..2675125 (-) Length   294 a.a.
NCBI ID   WP_017395194.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain XH900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2669241..2680125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR56_RS13045 (BSR56_13160) - 2669827..2670906 (+) 1080 WP_100834050.1 PhoH family protein -
  BSR56_RS13050 (BSR56_13165) ybeY 2670925..2671410 (+) 486 WP_100834051.1 rRNA maturation RNase YbeY -
  BSR56_RS13055 (BSR56_13170) - 2671422..2671721 (+) 300 WP_004637836.1 antibiotic biosynthesis monooxygenase family protein -
  BSR56_RS13060 (BSR56_13175) - 2671792..2673855 (-) 2064 WP_409449424.1 TonB-dependent siderophore receptor -
  BSR56_RS13065 (BSR56_13180) tonB2 2674241..2675125 (-) 885 WP_017395194.1 energy transducer TonB Machinery gene
  BSR56_RS13070 (BSR56_13185) - 2675361..2676044 (+) 684 WP_100834052.1 hypothetical protein -
  BSR56_RS13075 (BSR56_13190) - 2676239..2676955 (+) 717 WP_004637832.1 DUF3108 domain-containing protein -
  BSR56_RS13080 (BSR56_13195) - 2677100..2677675 (+) 576 WP_004637831.1 xanthine phosphoribosyltransferase -
  BSR56_RS13085 (BSR56_13200) - 2677715..2677984 (-) 270 WP_100834053.1 hypothetical protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33531.08 Da        Isoelectric Point: 6.8580

>NTDB_id=207833 BSR56_RS13065 WP_017395194.1 2674241..2675125(-) (tonB2) [Acinetobacter haemolyticus strain XH900]
MWNKINFRTQMTSFWWQDPIFVGAVVIAIMVHGLVLITQFSMPAPTDTSTKEIAVSVRPSQDKVEHADFLAQTDQQGSGE
FHQAHRMSSDMPTPMQSDATTGEHELESLETIQQKRELLFEEKVLMTVLSWQKQAEQNERKKALEELQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLAGEVRLMVILNAQGGIRAIRL
IESSGHPILDEAARASVRRGAPFGAFDSSMKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=207833 BSR56_RS13065 WP_017395194.1 2674241..2675125(-) (tonB2) [Acinetobacter haemolyticus strain XH900]
ATGTGGAATAAAATAAATTTTCGTACTCAAATGACTTCCTTTTGGTGGCAAGATCCGATTTTTGTTGGAGCAGTTGTTAT
TGCAATCATGGTACATGGACTCGTACTGATAACACAATTTTCAATGCCTGCACCTACTGATACATCAACCAAAGAAATCG
CCGTGTCTGTACGTCCAAGTCAAGATAAGGTCGAGCATGCAGATTTTTTAGCGCAAACTGATCAACAAGGATCAGGTGAA
TTTCATCAAGCACATCGTATGTCTAGTGATATGCCCACGCCAATGCAAAGTGATGCAACCACAGGAGAGCATGAGCTAGA
AAGTCTCGAAACCATACAACAGAAGCGTGAACTCCTCTTTGAGGAAAAAGTGTTAATGACAGTGTTAAGTTGGCAAAAGC
AAGCTGAACAGAATGAACGTAAGAAAGCATTAGAAGAATTACAAAGTCAATTTCAAGCCAAAGCTGCGATGGTGGCAAGT
TTAGAAGCGCAATATTTACAACGGCAACAAAATTTTAGCCGTAAGCAACGTATTAAAACGGTTGATGGGATACAAGCGAA
ACAAGATGCATCGGCAGCGTATCTCGATAAATTCCGACAAAAAGTTGAGTTGTATGGCAATCGTTATTATCCCGATGCGG
CAAAACAGCAACGCTTAGCGGGTGAAGTCCGTTTAATGGTGATTTTAAATGCGCAAGGCGGTATCCGAGCCATTCGTTTA
ATTGAGAGCTCAGGACATCCGATTTTGGATGAAGCAGCTCGTGCTTCTGTTCGCCGTGGTGCACCATTTGGAGCTTTTGA
CAGCAGTATGAAAGATATTTCTGAGTTACGTATTATCCGAACATGGCGTTTTGATCCAGTGGATGCTGAATTTGAAGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.83

100

0.748

Multiple sequence alignment