Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   L_RS11325 Genome accession   NC_002662
Coordinates   2237490..2238518 (-) Length   342 a.a.
NCBI ID   WP_010906347.1    Uniprot ID   A0AAP4JQE3
Organism   Lactococcus lactis subsp. lactis Il1403     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2232490..2243518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L_RS11300 (L16221) - 2232776..2233273 (-) 498 WP_010906343.1 nitroreductase family protein -
  L_RS11305 (L16705) - 2233260..2233469 (-) 210 WP_003132661.1 hypothetical protein -
  L_RS11310 (L16911) - 2233466..2234293 (-) 828 WP_010906344.1 radical SAM protein -
  L_RS11315 (L19128) - 2234286..2236409 (-) 2124 WP_010906345.1 radical SAM protein -
  L_RS11320 (L19959) - 2236512..2237369 (-) 858 WP_010906346.1 transcriptional regulator -
  L_RS11325 (L20937) sepM 2237490..2238518 (-) 1029 WP_010906347.1 SepM family pheromone-processing serine protease Regulator
  L_RS11330 (L21952) coaD 2238505..2239002 (-) 498 WP_010906348.1 pantetheine-phosphate adenylyltransferase -
  L_RS11335 (L22498) rsmD 2239050..2239589 (-) 540 WP_015427191.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  L_RS11340 (L23405) - 2239760..2240980 (-) 1221 WP_003132654.1 MDR family MFS transporter -
  L_RS11345 (L24511) lmrP 2241064..2242290 (-) 1227 WP_010906350.1 multidrug efflux MFS transporter LmrP -
  L_RS11350 (L0142) - 2242478..2242972 (+) 495 WP_010906351.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37379.98 Da        Isoelectric Point: 9.9183

>NTDB_id=20783 L_RS11325 WP_010906347.1 2237490..2238518(-) (sepM) [Lactococcus lactis subsp. lactis Il1403]
MKKNKKINPKLKWGISIGLIVVALLALFYPTSYYVEMPGTTEPLGKMVKVEGKKDEHKGDFFLTTVQIARANLATMIYSH
FNSFTSIYSEQEMTGGLNDAQFNRVNQFYMETAQNTAIYQAFKLANKPYELKYEGVYVLDIAKNSTFKNKLELADTITAV
NGQQFTSSADMIAYVSKQKVGDSVTIEYTRIDGTKHKSTGKYIKIANGKTGIGISLVDHTEVVTTPKVTVNAGSIGGPSA
GMMFTLEIYSQLTGKDLRNGREIAGTGTIEHDGSIGQIGGVDKKVATASKEGAKVFLVPDSGTKKESSNNYLGAKTAAKK
LKTKMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=20783 L_RS11325 WP_010906347.1 2237490..2238518(-) (sepM) [Lactococcus lactis subsp. lactis Il1403]
ATGAAAAAAAATAAAAAAATTAATCCCAAATTAAAATGGGGAATCTCGATTGGTCTAATTGTTGTTGCCCTTTTAGCTTT
ATTTTATCCAACGAGTTACTATGTGGAAATGCCCGGAACAACCGAGCCTTTAGGGAAAATGGTCAAAGTTGAAGGCAAAA
AAGATGAACATAAAGGTGATTTTTTCCTGACGACTGTCCAAATTGCACGAGCAAATCTTGCTACAATGATTTACAGCCAT
TTTAATAGTTTTACAAGCATTTACAGTGAGCAAGAAATGACTGGTGGACTTAACGACGCACAGTTCAACCGTGTCAACCA
GTTTTACATGGAAACGGCACAGAATACAGCGATTTATCAAGCTTTTAAATTAGCTAATAAACCTTATGAACTTAAATATG
AAGGCGTTTATGTCCTTGATATTGCCAAAAATTCGACCTTTAAAAATAAGCTAGAACTTGCAGATACGATTACAGCAGTC
AATGGTCAACAGTTTACATCAAGTGCCGACATGATTGCTTATGTTTCCAAACAAAAAGTCGGTGATTCAGTAACGATTGA
ATACACGAGAATTGACGGCACAAAGCACAAGTCAACTGGCAAATACATCAAAATTGCTAATGGAAAAACAGGAATTGGGA
TCAGCCTAGTTGACCATACTGAAGTCGTGACGACTCCAAAAGTTACTGTCAACGCGGGTTCAATCGGTGGTCCCTCTGCG
GGGATGATGTTTACACTAGAAATTTACAGTCAGTTGACAGGAAAAGATTTGCGAAACGGTCGCGAAATTGCTGGAACTGG
AACGATTGAACATGACGGAAGCATTGGCCAAATCGGCGGTGTTGATAAAAAAGTAGCCACAGCGAGCAAAGAAGGGGCAA
AGGTCTTCTTAGTGCCTGACTCAGGCACCAAAAAGGAAAGCAGCAACAATTACCTTGGAGCCAAAACCGCAGCTAAAAAA
CTAAAAACGAAGATGAAAATCGTTCCCGTCAAAACTATTCAGGACGCTTTAGATTATTTAGAAAAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(227-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.696

100

0.491

Multiple sequence alignment