Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   CO687_RS04800 Genome accession   NZ_CP023511
Coordinates   963943..964860 (+) Length   305 a.a.
NCBI ID   WP_096754999.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 958943..969860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS04780 (CO687_04780) scaA 959244..960176 (-) 933 WP_061584967.1 metal ABC transporter substrate-binding lipoprotein/adhesin ScaA -
  CO687_RS04785 (CO687_04785) - 960198..961034 (-) 837 WP_045504337.1 metal ABC transporter permease -
  CO687_RS04790 (CO687_04790) - 961036..961755 (-) 720 WP_012130835.1 metal ABC transporter ATP-binding protein -
  CO687_RS04795 (CO687_04795) - 961902..963794 (+) 1893 WP_096754998.1 M13-type metalloendopeptidase -
  CO687_RS04800 (CO687_04800) comR 963943..964860 (+) 918 WP_096754999.1 XRE family transcriptional regulator Regulator
  CO687_RS04805 (CO687_04805) - 965005..965934 (+) 930 WP_096755000.1 ABC transporter ATP-binding protein -
  CO687_RS04810 (CO687_04810) - 965927..966805 (+) 879 WP_096755001.1 ABC transporter permease -
  CO687_RS04815 (CO687_04815) - 966880..967578 (-) 699 WP_172858953.1 ion transporter -
  CO687_RS04820 (CO687_04820) - 967874..968437 (-) 564 WP_048777655.1 isoprenylcysteine carboxylmethyltransferase family protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 36093.27 Da        Isoelectric Point: 4.3422

>NTDB_id=207829 CO687_RS04800 WP_096754999.1 963943..964860(+) (comR) [Streptococcus gordonii strain FDAARGOS_371]
MEFKEELGQKIQSLREEKGLSRLAICGEEDILTTRQLQRIEKGQSLPTIATALYIAEQLEVSLDTLANRERLELPSGYFE
LKYRLEKLYHYGDGERLQQREELIEEIYRKYFDQLPEEEQLYLQIKQAKNDMVLTENIAYDQGLIDEYLDQALAKEKLTE
MDLEIIDLRLLALGLKDFDKKEFTCLLNKLLEAVADYPTSGLEKIQTRIIFAAGVLSHYQEYDLLPKILRALEELMLRRN
DFQDRVFSYALQWEIALFLENNLEKAEDNYQKVKLMLELLPEDVLKENMRLDWEQDISRYSKIDE

Nucleotide


Download         Length: 918 bp        

>NTDB_id=207829 CO687_RS04800 WP_096754999.1 963943..964860(+) (comR) [Streptococcus gordonii strain FDAARGOS_371]
GTGGAATTTAAGGAAGAGCTAGGACAGAAAATTCAATCTCTAAGAGAAGAAAAAGGCTTGAGTCGTCTGGCGATTTGTGG
GGAAGAAGACATTTTGACAACGCGGCAACTACAGCGAATTGAAAAAGGCCAGTCTCTGCCTACCATCGCGACAGCTCTCT
ATATTGCTGAGCAACTGGAAGTATCACTGGATACACTAGCAAATAGAGAGCGATTAGAGTTACCGTCTGGCTATTTTGAA
TTGAAGTATCGCTTGGAAAAGCTATATCACTATGGCGATGGAGAACGTCTTCAACAGAGAGAAGAGCTGATCGAAGAAAT
CTATCGAAAATATTTTGATCAACTCCCTGAGGAAGAACAACTTTATCTTCAGATTAAGCAGGCCAAGAACGATATGGTTT
TAACGGAAAATATTGCCTATGATCAAGGCTTAATAGATGAATATCTGGATCAGGCTTTGGCCAAAGAAAAATTGACGGAA
ATGGATCTAGAAATCATTGATTTACGCCTGTTGGCGCTTGGTTTGAAAGATTTTGACAAGAAGGAGTTTACTTGTTTGCT
AAACAAGTTGCTTGAGGCGGTAGCTGATTATCCTACCAGCGGCTTGGAAAAAATCCAGACCAGAATCATTTTTGCGGCGG
GGGTCTTGTCTCATTATCAAGAATATGACCTCCTACCTAAAATATTACGAGCCCTGGAAGAGCTGATGTTGAGGCGAAAC
GACTTTCAAGATCGTGTCTTTAGCTATGCGCTTCAGTGGGAAATCGCCCTCTTCTTAGAAAACAATCTCGAAAAAGCTGA
GGACAACTATCAAAAGGTAAAGTTAATGCTAGAGCTATTGCCAGAAGATGTCCTTAAGGAGAATATGAGGCTGGACTGGG
AGCAGGATATAAGCCGCTATAGTAAAATTGATGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(11-66)

ComR tetratricopeptide (ComR_TPR)

(75-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.037

97.377

0.361