Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   BSR55_RS02890 Genome accession   NZ_CP018259
Coordinates   608217..609020 (+) Length   267 a.a.
NCBI ID   WP_004825013.1    Uniprot ID   A0A0A8TUP8
Organism   Acinetobacter bereziniae strain XH901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603217..614020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS02865 (BSR55_02850) - 603914..605200 (+) 1287 WP_100884482.1 glycosyltransferase family 4 protein -
  BSR55_RS02870 (BSR55_02855) - 605231..605782 (+) 552 WP_004825017.1 phosphatase PAP2 family protein -
  BSR55_RS02875 (BSR55_02860) iscX 605956..606156 (+) 201 WP_004725877.1 Fe-S cluster assembly protein IscX -
  BSR55_RS02880 (BSR55_02865) ndk 606299..606730 (+) 432 WP_004725878.1 nucleoside-diphosphate kinase -
  BSR55_RS02885 (BSR55_02870) rlmN 606907..608157 (+) 1251 WP_005033888.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BSR55_RS02890 (BSR55_02875) pilF 608217..609020 (+) 804 WP_004825013.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  BSR55_RS02895 (BSR55_02880) - 609011..609799 (+) 789 WP_004825011.1 helix-turn-helix domain-containing protein -
  BSR55_RS02900 (BSR55_02885) ispG 609821..610936 (+) 1116 WP_058971800.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  BSR55_RS02905 (BSR55_02890) hisS 610933..612228 (+) 1296 WP_009584421.1 histidine--tRNA ligase -
  BSR55_RS02910 (BSR55_02895) - 612259..612960 (+) 702 WP_004825005.1 YfgM family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29949.02 Da        Isoelectric Point: 9.2123

>NTDB_id=207785 BSR55_RS02890 WP_004825013.1 608217..609020(+) (pilF) [Acinetobacter bereziniae strain XH901]
MYQKAVVILAIGLSALVVQGCQTTNSDTIIKKDPEKAVKVRTQLAAEYIRSGDLDAAKRALDQALETDSRDSAANMMMGV
LLQQEGSKISMEKADGYFKRAISSDSKNAQARNNYGTYLFVSERYNDAIEQLSIAGASLGYDQRYKALENLGRVYLKVGD
TANAEKAFKNALQVNRDSIISLVELSEIFYLQQKNAQASQLYEQYVRLVGQDKQGARALWIGLRIARANNDQMGMQVLVN
QLRALFPDSKEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=207785 BSR55_RS02890 WP_004825013.1 608217..609020(+) (pilF) [Acinetobacter bereziniae strain XH901]
ATGTATCAAAAAGCAGTTGTAATATTGGCAATTGGTTTATCTGCATTGGTGGTACAGGGTTGTCAAACGACAAACTCAGA
CACAATTATAAAAAAAGATCCTGAGAAAGCCGTCAAAGTTCGTACCCAGTTAGCTGCGGAGTATATTCGATCAGGCGATC
TGGATGCAGCTAAACGTGCACTCGATCAAGCCCTAGAAACCGATTCACGAGATTCAGCTGCCAATATGATGATGGGAGTT
TTACTACAACAAGAAGGTAGTAAGATCAGCATGGAAAAAGCGGATGGCTATTTTAAGCGTGCGATTTCCAGTGATTCGAA
AAATGCGCAGGCTCGTAATAATTATGGAACATATTTATTTGTTAGCGAGCGTTATAATGATGCGATTGAGCAGTTGAGTA
TCGCAGGCGCATCTCTTGGATACGACCAGCGTTATAAGGCTTTAGAAAATTTGGGGCGGGTATATTTAAAAGTTGGTGAT
ACAGCAAATGCCGAAAAAGCATTCAAAAATGCCCTACAAGTCAATCGCGATTCGATCATTTCTTTGGTAGAGTTGTCTGA
GATTTTCTATTTGCAACAAAAAAATGCGCAAGCAAGTCAACTCTATGAACAATATGTTCGTTTAGTAGGTCAGGACAAAC
AGGGCGCAAGAGCACTCTGGATTGGTTTACGTATTGCACGTGCCAATAATGACCAGATGGGAATGCAAGTACTGGTGAAC
CAGTTGCGGGCATTATTCCCTGACAGTAAAGAATATCAACGTTATCTGCAATTACAGTACAGTACTGAGGCCGTATGGAA
GTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(116-173)

Tetratricopeptide repeat (TPR_16)

(44-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TUP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

74.717

99.251

0.742
  pilF Acinetobacter baylyi ADP1

67.843

95.506

0.648

Multiple sequence alignment