Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   BSR55_RS02655 Genome accession   NZ_CP018259
Coordinates   558654..559535 (+) Length   293 a.a.
NCBI ID   WP_100884463.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain XH901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553654..564535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS02630 (BSR55_02615) - 554589..554951 (-) 363 WP_042090293.1 hypothetical protein -
  BSR55_RS02635 (BSR55_02620) - 555184..556047 (-) 864 WP_100884461.1 acyl-CoA thioesterase -
  BSR55_RS02640 (BSR55_02625) - 556199..556774 (-) 576 WP_009586949.1 xanthine phosphoribosyltransferase -
  BSR55_RS02645 (BSR55_02630) - 556878..557585 (-) 708 WP_009586948.1 DUF3108 domain-containing protein -
  BSR55_RS02650 (BSR55_02635) - 557737..558423 (-) 687 WP_100884462.1 hypothetical protein -
  BSR55_RS02655 (BSR55_02640) tonB2 558654..559535 (+) 882 WP_100884463.1 energy transducer TonB Machinery gene
  BSR55_RS02660 (BSR55_02645) - 559612..560094 (-) 483 WP_100884464.1 ankyrin repeat domain-containing protein -
  BSR55_RS02665 (BSR55_02650) - 560201..560485 (-) 285 WP_100884465.1 antibiotic biosynthesis monooxygenase family protein -
  BSR55_RS02670 (BSR55_02655) - 560584..561495 (-) 912 WP_004825105.1 bestrophin family protein -
  BSR55_RS02675 (BSR55_02660) radC 561534..562268 (-) 735 WP_034707928.1 RadC family protein -
  BSR55_RS02680 (BSR55_02665) coaBC 562371..563636 (+) 1266 WP_005033953.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BSR55_RS02685 (BSR55_02670) - 563801..564175 (+) 375 WP_004825098.1 cytochrome b562 -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33382.91 Da        Isoelectric Point: 8.3470

>NTDB_id=207783 BSR55_RS02655 WP_100884463.1 558654..559535(+) (tonB2) [Acinetobacter bereziniae strain XH901]
MIKKLFANTQHTGYWWQDALFVGAVSIAVIVHGLFLSVQFGMPQENNTATKEIAVSIRPSEDKVKDADFLAQADQQGSGT
FRKEHRMSSDMPAQAEDKSAGDQQLEALEQIQQKRELKFEEKVLMTVLSWQKQAEQNDRKKAMEEFQSQMQAKAAMVASL
EAQYLQKQQNFSKQQKIKTLDGIQAKQDASAGYLDKFREKVEMYGNRYYPDLAKQQRLSGEVRLMVILNNEGGIRAIRLI
ESSGHAILDEAAKNSVRKGAPFGRFDAKMKDISELRIVRTWRFDPAESEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=207783 BSR55_RS02655 WP_100884463.1 558654..559535(+) (tonB2) [Acinetobacter bereziniae strain XH901]
ATGATAAAAAAATTATTTGCCAATACGCAACATACTGGGTACTGGTGGCAAGATGCATTATTTGTCGGGGCAGTTTCAAT
TGCTGTAATTGTCCACGGGTTATTTTTATCTGTGCAATTTGGTATGCCGCAAGAAAATAATACTGCGACAAAAGAAATTG
CTGTCAGTATTCGCCCAAGTGAAGATAAAGTCAAAGATGCTGATTTCCTTGCGCAAGCAGATCAACAAGGTTCAGGAACC
TTTCGTAAAGAACATCGGATGTCCTCTGATATGCCAGCACAAGCTGAAGATAAAAGTGCAGGGGATCAACAGCTTGAAGC
TTTAGAGCAAATACAGCAAAAACGTGAATTAAAATTTGAAGAAAAAGTGCTGATGACCGTTTTAAGTTGGCAAAAGCAAG
CTGAACAAAACGATCGAAAAAAGGCAATGGAAGAATTCCAAAGCCAAATGCAAGCCAAAGCCGCGATGGTGGCGAGCTTA
GAAGCACAATATTTACAGAAGCAGCAAAATTTTAGTAAACAACAAAAAATTAAAACCTTAGATGGCATTCAAGCGAAACA
AGATGCGTCGGCTGGTTATTTGGATAAATTCCGTGAAAAAGTCGAAATGTATGGCAATCGCTATTATCCTGATCTTGCTA
AGCAACAGCGCCTTTCAGGTGAAGTTCGTTTAATGGTGATTCTGAATAATGAAGGGGGAATACGGGCAATTCGTTTAATC
GAAAGTTCAGGTCATGCCATTTTAGATGAAGCCGCTAAAAATTCGGTACGTAAGGGTGCTCCATTTGGACGTTTTGATGC
AAAAATGAAAGATATTTCTGAGCTACGAATTGTCAGAACGTGGCGTTTCGATCCCGCTGAGTCTGAATTTGAAGTCCATT
AG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.769

100

0.72

Multiple sequence alignment