Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | BS065_RS10335 | Genome accession | NZ_CP018256 |
| Coordinates | 2157939..2158319 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AF-673 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2152939..2163319
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS065_RS10305 (BS065_10300) | tadA | 2153057..2153560 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| BS065_RS10310 (BS065_10305) | - | 2153567..2154691 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| BS065_RS10315 (BS065_10310) | ung | 2154688..2155401 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| BS065_RS10320 (BS065_10315) | - | 2155452..2156048 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| BS065_RS10325 (BS065_10320) | gspK | 2156279..2157238 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| BS065_RS10330 (BS065_10325) | xcpW | 2157238..2157939 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| BS065_RS10335 (BS065_10330) | xcpV | 2157939..2158319 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| BS065_RS10340 (BS065_10335) | - | 2158309..2158863 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| BS065_RS10345 (BS065_10340) | - | 2158873..2159481 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| BS065_RS10350 (BS065_10345) | - | 2159519..2160292 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| BS065_RS10355 (BS065_10350) | - | 2160310..2160651 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| BS065_RS10360 (BS065_10355) | - | 2160663..2161643 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| BS065_RS10365 (BS065_10360) | kdsB | 2161655..2162416 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=207737 BS065_RS10335 WP_000836911.1 2157939..2158319(-) (xcpV) [Acinetobacter baumannii strain AF-673]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=207737 BS065_RS10335 WP_000836911.1 2157939..2158319(-) (xcpV) [Acinetobacter baumannii strain AF-673]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |