Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BS065_RS01650 Genome accession   NZ_CP018256
Coordinates   346344..347162 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AF-673     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341344..352162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS065_RS20065 - 341927..342056 (-) 130 Protein_304 hypothetical protein -
  BS065_RS01620 (BS065_01605) rpoZ 342095..342373 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BS065_RS01625 (BS065_01610) gmk 342446..343075 (-) 630 WP_000015937.1 guanylate kinase -
  BS065_RS01630 (BS065_01615) ispH 343198..344148 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BS065_RS01635 (BS065_01620) fimU 344318..344791 (+) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  BS065_RS01640 (BS065_01625) pilV 344785..345345 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  BS065_RS01645 (BS065_01630) pilW 345346..346347 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  BS065_RS01650 (BS065_01635) pilX 346344..347162 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BS065_RS01655 (BS065_01640) pilY1 347174..351028 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  BS065_RS01660 (BS065_01645) pilY2 351041..351523 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  BS065_RS01665 (BS065_01650) pilE 351520..351945 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=207723 BS065_RS01650 WP_000149374.1 346344..347162(+) (pilX) [Acinetobacter baumannii strain AF-673]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=207723 BS065_RS01650 WP_000149374.1 346344..347162(+) (pilX) [Acinetobacter baumannii strain AF-673]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment