Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   CO686_RS01175 Genome accession   NZ_CP023507
Coordinates   241729..242778 (+) Length   349 a.a.
NCBI ID   WP_049550484.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 236729..247778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS01140 (CO686_01140) - 237451..238083 (+) 633 WP_000756344.1 DJ-1/PfpI family protein -
  CO686_RS01150 (CO686_01150) dnaJ 238298..239434 (+) 1137 WP_049500972.1 molecular chaperone DnaJ -
  CO686_RS01155 (CO686_01155) - 239512..240165 (-) 654 WP_049520672.1 hypothetical protein -
  CO686_RS01160 (CO686_01160) - 240235..240513 (-) 279 WP_049520671.1 hypothetical protein -
  CO686_RS01165 (CO686_01165) - 240523..240933 (-) 411 WP_049520670.1 HIT family protein -
  CO686_RS01170 (CO686_01170) pptA 241001..241732 (+) 732 WP_049550485.1 ABC transporter ATP-binding protein Regulator
  CO686_RS01175 (CO686_01175) pptB 241729..242778 (+) 1050 WP_049550484.1 ABC transporter permease Regulator
  CO686_RS01180 (CO686_01180) ccrZ 242826..243620 (+) 795 WP_049550483.1 cell cycle regulator CcrZ -
  CO686_RS01185 (CO686_01185) trmB 243617..244252 (+) 636 WP_001266088.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CO686_RS01190 (CO686_01190) rimP 244379..244858 (+) 480 WP_000338696.1 ribosome maturation factor RimP -
  CO686_RS01195 (CO686_01195) nusA 244901..246037 (+) 1137 WP_049550482.1 transcription termination factor NusA -
  CO686_RS01200 (CO686_01200) - 246059..246352 (+) 294 WP_000857568.1 YlxR family protein -
  CO686_RS01205 (CO686_01205) - 246345..246644 (+) 300 WP_001041395.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40227.10 Da        Isoelectric Point: 9.8235

>NTDB_id=207682 CO686_RS01175 WP_049550484.1 241729..242778(+) (pptB) [Streptococcus oralis strain FDAARGOS_367]
MKDLFLRRKQAFRKECVGYLRYVLNDHFVLFLLVLIGFLAYQYSQLLQDFPENHGSILLFLGIVSALLLAWGGIATYMEV
PDKLFLLVSEEEVKSYLKGQTVRSLVFWTIVQTFFLLLFAPLFLAMGYGLLAFLVYVLLLGAAKYLLFRHKASKFYTETG
LDWDYVIAQESKRKQVLLRFFALFTQVKGVSNSVKRRAYLDFILKAVQKVPSKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAVIFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLEKGEKEKGLKQIVLGVGSAVLLLELLVGAVVFQE
KIALLALVGASLFLQLFYLPYQLKRLVDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=207682 CO686_RS01175 WP_049550484.1 241729..242778(+) (pptB) [Streptococcus oralis strain FDAARGOS_367]
ATGAAAGACTTGTTTTTAAGGAGAAAGCAGGCTTTTCGTAAGGAGTGCGTCGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTATTCCTGCTTGTTCTCATCGGTTTTCTAGCCTACCAGTACAGTCAACTCTTGCAAGATTTTCCTGAAAATC
ATGGGTCCATCCTCTTGTTTTTGGGAATTGTATCTGCCTTGCTTTTGGCTTGGGGAGGAATCGCGACCTACATGGAAGTA
CCTGACAAGCTCTTTCTCTTAGTATCTGAAGAGGAGGTGAAGTCATACCTCAAAGGGCAGACGGTGCGTTCATTGGTTTT
CTGGACAATTGTTCAAACCTTCTTTTTACTCTTATTTGCACCCTTGTTTTTAGCCATGGGCTATGGCTTGCTAGCCTTTC
TCGTCTATGTGCTTTTACTGGGAGCAGCGAAGTACCTCCTCTTTCGACACAAAGCCAGCAAATTTTATACTGAGACTGGC
CTCGACTGGGACTATGTCATTGCCCAAGAAAGCAAGCGCAAGCAAGTCTTGCTTCGTTTCTTTGCTCTCTTTACTCAGGT
CAAGGGGGTTTCAAATAGTGTCAAACGTCGCGCTTATCTGGATTTTATCCTTAAAGCAGTTCAGAAAGTGCCGAGCAAGA
TTTGGCAAAACCTCTATCTTCGTTCTTATCTGCGAAATGGAGACCTCTTTGCCCTCAGTCTCCGCCTCTTACTCCTATCC
TTGTTAGCTGTGATCTTCATCGAGCAGTCTTGGATCGCGACAGCAGTAGTAGTTTTATTTAACTATCTCCTGCTCTTTCA
GTTACTGGCCCTCTATCATGCCTTTGACTACCAGTACTTGACTCAGCTCTTTCCACTAGAAAAAGGGGAGAAAGAGAAGG
GATTGAAACAGATTGTGCTTGGTGTGGGAAGTGCAGTTCTTTTGCTGGAATTGCTAGTCGGAGCAGTGGTTTTTCAAGAA
AAAATAGCCTTGTTGGCTCTTGTAGGGGCTAGTCTCTTCCTACAATTGTTTTATTTGCCTTACCAACTAAAAAGATTGGT
TGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.126

99.713

0.47

  pptB Streptococcus thermophilus LMD-9

45.69

99.713

0.456


Multiple sequence alignment