Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   NCTC11637_00624 Genome accession   LS483488
Coordinates   605600..606649 (-) Length   349 a.a.
NCBI ID   SQJ04307.1    Uniprot ID   -
Organism   Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 600600..611649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCTC11637_00620 rpsG 600895..601362 (+) 468 SQJ04301.1 30S ribosomal protein S7 -
  NCTC11637_00621 fusA 601374..603452 (+) 2079 SQJ04303.1 elongation factor G -
  NCTC11637_00622 iolS 603989..604978 (-) 990 SQJ04304.1 aldo/keto reductase -
  NCTC11637_00623 - 605197..605469 (+) 273 SQJ04306.1 secreted protein -
  NCTC11637_00624 waaF 605600..606649 (-) 1050 SQJ04307.1 ADP-heptose-lps heptosyltransferase II Regulator
  NCTC11637_00625 hisS 606711..608039 (+) 1329 SQJ04309.1 histidyl-tRNA synthetase -
  NCTC11637_00626 asd 608026..609066 (+) 1041 SQJ04312.1 aspartate-semialdehyde dehydrogenase -
  NCTC11637_00627 - 609478..610716 (+) 1239 SQJ04314.1 Helicobacter pylori protein of uncharacterised function (DUF874) -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39510.21 Da        Isoelectric Point: 9.6394

>NTDB_id=20762 NCTC11637_00624 SQJ04307.1 605600..606649(-) (waaF) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFTDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDTIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHAAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=20762 NCTC11637_00624 SQJ04307.1 605600..606649(-) (waaF) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTAGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGACGACACCAAAAAATCCTTTTTCAGGCTGTTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.135

97.994

0.364

Multiple sequence alignment